Document Detail


mzIdentML: an open community-built standard format for the results of proteomics spectrum identification algorithms.
MedLine Citation:
PMID:  21063947     Owner:  NLM     Status:  In-Process    
Abstract/OtherAbstract:
To deal with the data flood of current mass spectrometry methods, standard data formats are needed. The Proteomics Standards Initiative (PSI) of the Human Proteome Organisation (HUPO) develops open storage and transfer standards for and with the community. The Proteomics Informatics work group of the PSI has recently released an XML-based format to store the parameters and results of spectrum identification algorithms (the so-called search engines), which identify peptides and/or proteins from mass spectra. Here, this format called "mzIdentML" is described by giving principle design concepts and presenting examples of important use cases.
Authors:
Martin Eisenacher
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't    
Journal Detail:
Title:  Methods in molecular biology (Clifton, N.J.)     Volume:  696     ISSN:  1940-6029     ISO Abbreviation:  Methods Mol. Biol.     Publication Date:  2011  
Date Detail:
Created Date:  2010-11-10     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  9214969     Medline TA:  Methods Mol Biol     Country:  United States    
Other Details:
Languages:  eng     Pagination:  161-77     Citation Subset:  IM    
Affiliation:
Medizinisches Proteom-Center, Ruhr-Universität Bochum, Bochum, Germany.
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