Document Detail


Using the Saccharomyces Genome Database (SGD) for analysis of genomic information.
MedLine Citation:
PMID:  21901739     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Analysis of genomic data requires access to software tools that place the sequence-derived information in the context of biology. The Saccharomyces Genome Database (SGD) integrates functional information about budding yeast genes and their products with a set of analysis tools that facilitate exploring their biological details. This unit describes how the various types of functional data available at SGD can be searched, retrieved, and analyzed. Starting with the guided tour of the SGD Home page and Locus Summary page, this unit highlights how to retrieve data using YeastMine, how to visualize genomic information with GBrowse, how to explore gene expression patterns with SPELL, and how to use Gene Ontology tools to characterize large-scale datasets.
Authors:
Marek S Skrzypek; Jodi Hirschman
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Extramural    
Journal Detail:
Title:  Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.]     Volume:  Chapter 1     ISSN:  1934-340X     ISO Abbreviation:  Curr Protoc Bioinformatics     Publication Date:  2011 Sep 
Date Detail:
Created Date:  2011-09-08     Completed Date:  2011-12-29     Revised Date:  2014-09-08    
Medline Journal Info:
Nlm Unique ID:  101157830     Medline TA:  Curr Protoc Bioinformatics     Country:  United States    
Other Details:
Languages:  eng     Pagination:  Unit 1.20.1-23     Citation Subset:  IM    
Copyright Information:
© 2011 by John Wiley & Sons, Inc.
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MeSH Terms
Descriptor/Qualifier:
Computational Biology / methods*
Data Mining / methods
Databases, Genetic*
Genome, Fungal / genetics*
Information Dissemination / methods*
Information Storage and Retrieval / methods*
Microarray Analysis / methods
Saccharomyces cerevisiae / genetics*
Search Engine / methods
Software
Grant Support
ID/Acronym/Agency:
P41 HG001315/HG/NHGRI NIH HHS; P41 HG001315/HG/NHGRI NIH HHS; P41 HG001315-08/HG/NHGRI NIH HHS
Comments/Corrections

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