Document Detail


Transcriptome analysis of male and female Sebastiscus marmoratus.
MedLine Citation:
PMID:  23209808     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
BACKGROUND: The rockfish Sebastiscus marmoratus, which is widely distributed in the East Sea and the South Sea of China, is a sensitive model for the toxic effects and mechanisms of marine contaminants. To gain a global view of the molecular mechanism(s) whereby gene expression may influence sexual dimorphism in S. marmoratus, and to develop a database for further toxicological studies, we performed a large-scale transcriptome study.
METHODOLOGY/PRINCIPAL FINDINGS: The Illumina DNA sequencing platform was employed to obtain 27,559,578 and 25,821,126 reads from two cDNA libraries generated from adult male and female S. marmoratus, respectively. Transcriptome de novo assembly was carried out with the short reads assembling program-SOAPdenovo. The reads assembled into 78,675 unigenes, of which 38,677 showed homology to existing protein sequences. Clusters of orthologous groups, gene orthology, and the Kyoto Encyclopedia of Genes and Genomes annotations were performed to better understand the functions of these unigenes. There were 1,209 potential sex differentially expressed unigenes, with 1,049 predicted to be differentially expressed in females and 160 in males. Fifteen randomly chosen unigenes were confirmed using real-time PCR as female or male predominantly expressed genes.
CONCLUSIONS/SIGNIFICANCE: This is the first report of an annotated transcriptome of S. marmoratus and identification of sex differentially expressed genes. These data will be of interest to researchers using this model. This work also provides an archive for future studies in molecular mechanisms of sexual dimorphism and evolution and can be used in comparative studies of other fish.
Authors:
Lingbin Sun; Chonggang Wang; Lixing Huang; Meifang Wu; Zhenghong Zuo
Related Documents :
24387768 - Genome-wide association study of bipolar disorder in canadian and uk populations corrob...
21695218 - Defining global gene expression changes of the hypothalamic-pituitary-gonadal axis in f...
23935008 - Stop2 activates transcription of several genes for al- and low ph-tolerance that are re...
24607368 - Species- and sex-specific responses and recovery of wild, mature pacific salmon to an e...
1682128 - The msh-like homeobox genes define domains in the developing vertebrate eye.
1715968 - Effects of unilateral cortex lesions on gene expression of rat cortical cholecystokinin...
Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't     Date:  2012-11-27
Journal Detail:
Title:  PloS one     Volume:  7     ISSN:  1932-6203     ISO Abbreviation:  PLoS ONE     Publication Date:  2012  
Date Detail:
Created Date:  2012-12-04     Completed Date:  2013-05-22     Revised Date:  2013-07-11    
Medline Journal Info:
Nlm Unique ID:  101285081     Medline TA:  PLoS One     Country:  United States    
Other Details:
Languages:  eng     Pagination:  e50676     Citation Subset:  IM    
Affiliation:
State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:
Animals
China
Female
Fishes / genetics*
Gene Library
Male
Transcriptome / genetics*
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  TBK1 kinase addiction in lung cancer cells is mediated via autophagy of Tax1bp1/Ndp52 and non-canoni...
Next Document:  Molecular imaging of low-density lipoprotein in human coronary plaques by color fluorescent angiosco...