| Suitability of methods for species recognition in the Phialocephala fortinii-Acephala applanata species complex using DNA analysis. | |
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MedLine Citation:
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PMID: 17289408 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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Sequence data of two coding and three non-coding loci were used to study the taxonomic identity within and relatedness among seven previously defined cryptic species (CSP) of Phialocephala fortinii and Acephala applanata using two approaches of species recognition. Identification of taxonomic groups corresponding to CSP was ambiguous in some cases when applying solely the genealogical concordance phylogenetic species recognition (GCPSR) concept. The definition of groups corresponding to CSP using GCPSR was complicated due to shared sequence haplotypes between CSP, unresolved CSP for several loci, and possible introgression. GCPSR in conjunction with a population genetic approach improved resolution significantly and the CSP status could be confirmed for all seven CSP of P. fortinii s.l. The most critical step in both analyses was the definition of groups. The combination of several classes of markers differing in resolution helped to define species boundaries. |
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Authors:
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Christoph R Grünig; Patrick C Brunner; Angelo Duò; Thomas N Sieber |
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Publication Detail:
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Type: Comparative Study; Journal Article Date: 2006-12-31 |
Journal Detail:
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Title: Fungal genetics and biology : FG & B Volume: 44 ISSN: 1087-1845 ISO Abbreviation: Fungal Genet. Biol. Publication Date: 2007 Aug |
Date Detail:
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Created Date: 2007-06-05 Completed Date: 2007-10-19 Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 9607601 Medline TA: Fungal Genet Biol Country: United States |
Other Details:
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Languages: eng Pagination: 773-88 Citation Subset: IM |
Affiliation:
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ETH Zürich, Institute of Integrative Biology (IBZ), Forest Pathology and Dendrology, CH-8092 Zürich, Switzerland. |
| Data Bank Information | |
Bank Name/Acc. No.:
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GENBANK/DQ013016; DQ013017; DQ013018; DQ013019; DQ013020; DQ013021; DQ013022; DQ013023; DQ013024; DQ013025; DQ013026; DQ013027; DQ013028; DQ013029; DQ013030; DQ013031; DQ013032; DQ013033; DQ013034; DQ013035; DQ013036; DQ013037; DQ013038; DQ013039; DQ013069; DQ013070; DQ013071; DQ013072; DQ013073; DQ013074; DQ013075; DQ013076; DQ013077; DQ013078; DQ013079; DQ013080; DQ013081; DQ013082; DQ013083; DQ013084; DQ013085; DQ013086; DQ013087; DQ013088; DQ013089; DQ013090; DQ013091; DQ013092; DQ013093; DQ013094; DQ013095; DQ013096; DQ013097; DQ013098; DQ013099; DQ013100; DQ013101; DQ013102; DQ013103; DQ013104; DQ013105; DQ013106; DQ013107; DQ013108; DQ013109; DQ013110; DQ013111; DQ013112; DQ013113; DQ013114; DQ013115; DQ013116; DQ013117; DQ013118; DQ013119; DQ013120; DQ013121; DQ013122; DQ013123; DQ013124; DQ013125; DQ013126; DQ013127; DQ013128; DQ013129; DQ274504; DQ274505; DQ274506; DQ274507; DQ274508; DQ274509; DQ274510; DQ274511; DQ274512; DQ274513; DQ274514; DQ274515; DQ274516; DQ274517; DQ274518; DQ274519; DQ274520; DQ274521; DQ274522; DQ274523; DQ274524; DQ274525; DQ274526; DQ274527; DQ274528; DQ274529; DQ274530; DQ274531; DQ274532; DQ274533; DQ274534; DQ274535; DQ274536; DQ274537; DQ274538; DQ274539; DQ274540; DQ274541; DQ274542; DQ274543; DQ274544; DQ274545; DQ274546; DQ274547; DQ274548; DQ274549; DQ274550; DQ274551; DQ274552; DQ274553; DQ274554; DQ274555; DQ274556; DQ274557; DQ274558; DQ274559; DQ274560; DQ274561; DQ274562; DQ274563; DQ274564; DQ274565; DQ274566; DQ274567; DQ274568; DQ274569; DQ274570; DQ274571; DQ274572; DQ274573; DQ274574; DQ274575; DQ274576; DQ274577; DQ274578; DQ274579; DQ274580; DQ274581; DQ274582; DQ274583; DQ274584; DQ274585; DQ274586; DQ274587; DQ274588; DQ274589; DQ274590; DQ274591; DQ274592; DQ274593; DQ274594; DQ274595; DQ274596; DQ274597; DQ274598; DQ274599; DQ274600; DQ274601; DQ274602; DQ274603; DQ274604; DQ274605; DQ274606; DQ274607; DQ274608; DQ274609; DQ274610; DQ274611; DQ274612; DQ274613; DQ274614; DQ274615; DQ274616; DQ274617; DQ274618; DQ274619; DQ274695; DQ274696; DQ274697; DQ274698; DQ274699; DQ274700; DQ274701; DQ274702; DQ274703; DQ274704; DQ274705; DQ274706; DQ274707; DQ274708; DQ274709; DQ274710; DQ274711; DQ274712; DQ274713; DQ274714; DQ274715; DQ274716; DQ274717; DQ274718; DQ274719; DQ274720; DQ274721; DQ274722; DQ274723; DQ274724; DQ274725; DQ274726; DQ274727; DQ274728; DQ274729; DQ274730; DQ274731; DQ274732; DQ274733; DQ274734; DQ274735; DQ274736; DQ274737; DQ274738; DQ274739; DQ274740; DQ274741; DQ274742; DQ274743; DQ274744; DQ274745; DQ274746; DQ274747; DQ274748; DQ274749; DQ274750; DQ274751; DQ274752; DQ274753; DQ274754; DQ274755; DQ274756; DQ274757; DQ274758; DQ274759; DQ274760; DQ274761; DQ274762; DQ274763; DQ274764; DQ274765; DQ274766; DQ274767; DQ274768; DQ274769; DQ274770; DQ274771; DQ274772; DQ274773; DQ274774; DQ274775; DQ274776; DQ274777; DQ274778; DQ274779; DQ274780; DQ274781; DQ274782; DQ274783; DQ274784; DQ274785; DQ274786; DQ274787; DQ274788; DQ274789; DQ274790; DQ274791; DQ274792; DQ274793; DQ274794; DQ274795; DQ274796; DQ274797; DQ274798; DQ274799; DQ274800; DQ274801; DQ274802; DQ274803; DQ274804; DQ274805; DQ274806; DQ274807; DQ274808; DQ274809; DQ274810; DQ274811; DQ274812; DQ274813; DQ274814; DQ274815; DQ274816; DQ274817; DQ274818; DQ274819; DQ274820; DQ274821; DQ274822; DQ274823; DQ274824; DQ274825; DQ274826; DQ274827; DQ274828; DQ274829; DQ274830; DQ274831; DQ274832; DQ274833; DQ274834; DQ274835; DQ274836; DQ274837; DQ274838; DQ274839; DQ274840; DQ274841; DQ274842; DQ274843; DQ274844; DQ335461; DQ335463; DQ335464 |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Ascomycota
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classification*,
genetics Cluster Analysis DNA, Fungal / chemistry, genetics* Fungal Proteins / genetics Genetics, Population Molecular Sequence Data Mycology / methods* Peptide Elongation Factor 1 / genetics Phylogeny Polymerase Chain Reaction / methods Polymorphism, Restriction Fragment Length Sequence Analysis, DNA Tubulin / genetics |
| Chemical | |
Reg. No./Substance:
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0/DNA, Fungal; 0/Fungal Proteins; 0/Peptide Elongation Factor 1; 0/Tubulin |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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