|Stable silencing of β-lactoglobulin (BLG) gene by lentivirus-mediated RNAi in goat fetal fibroblasts.|
|Jump to Full Text|
|PMID: 23055809 Owner: NLM Status: PubMed-not-MEDLINE|
|β-lactoglobulin (BLG), a dominant allergen in goat milk, is difficult to remove by traditional biochemical methods. Its elimination from goat milk by genetic modification therefore poses a major challenge for modern goat breeders. A shRNA targeting BLG mRNA with high interference efficiency was identified, with which lentiviral vectors were used for mediating stable shRNA interference in goat-fetal fibroblast cells. Apart from high efficiency in the knockdown of BLG expression in these cells, lentivector-mediated RNAi manifested stable integration into the goat genome itself. Consequently, an in vitro model for goat BLG-content control was compiled, and a goat-cell line for accompanying transgenetic goat production created.|
|Shumin Zhang; Kai Xiong; Zhourui Xie; Wenting Nan; Honglin Liu; Jie Chen|
Related Documents :
|14734529 - Cell-to-cell transport of proteins and fluorescent tracers via plasmodesmata during pla...
7725349 - Inhibitors of renal chloride transport do not block toxicant-induced chloride influx in...
17357179 - Transport behavior and efflux of rg1 in rat pulmonary epithelial cells.
2156829 - Insulin action on activity and cell surface disposition of human hepg2 glucose transpor...
3944059 - Uptake of benzoate by rhodopseudomonas palustris grown anaerobically in light.
15670639 - Impairment of glutamate transport and increased vulnerability to oxidative stress in ne...
2902939 - The hut series of 'carcinogen-transformed' human fibroblast cell lines are derived from...
15585659 - A mammalian artificial chromosome engineering system (ace system) applicable to biophar...
10411919 - Stromal cell-derived factor 1 (sdf-1) and antenatal human b cell lymphopoiesis: express...
|Type: Journal Article Date: 2012-07-05|
|Title: Genetics and molecular biology Volume: 35 ISSN: 1678-4685 ISO Abbreviation: Genet. Mol. Biol. Publication Date: 2012 Jul|
|Created Date: 2012-10-11 Completed Date: 2012-10-12 Revised Date: 2013-04-02|
Medline Journal Info:
|Nlm Unique ID: 100883590 Medline TA: Genet Mol Biol Country: Brazil|
|Languages: eng Pagination: 680-5 Citation Subset: -|
|College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, People's Republic of China.|
|APA/MLA Format Download EndNote Download BibTex|
Journal ID (nlm-ta): Genet Mol Biol
Journal ID (iso-abbrev): Genet. Mol. Biol
Journal ID (publisher-id): GMB
Publisher: Sociedade Brasileira de Genética, Ribeirão Preto, SP, Brazil
Copyright © 2012, Sociedade Brasileira de Genética.
Received Day: 12 Month: 11 Year: 2011
Accepted Day: 04 Month: 2 Year: 2012
Print publication date: Season: Jul-Sep Year: 2012
Electronic publication date: Day: 05 Month: 7 Year: 2012
Volume: 35 Issue: 3
First Page: 680 Last Page: 685
PubMed Id: 23055809
Publisher Id: gmb-35-3-680
|Stable silencing of β-lactoglobulin (BLG) gene by lentivirus-mediated RNAi in goat fetal fibroblasts|
|College of Animal Science and Technology, Nanjing Agricultural University, Nanjing, People’s Republic of China.
|*These authors contributed equally to this work as co-first authors.
Correspondence: Send correspondence to Jie Chen. College of Animal Science and Technology, Nanjing Agricultural University, 210095 Nanjing, People’s Republic of China. E-mail email@example.com.
Although nutritious for humans, especially infants, goat milk and its by-products are considered important allergens in food allergy, whence the restrictions against their wide use in the food industry. β-lactoglobulin (BLG), a major protein in milk (56%–60% of total cow-whey proteins), is considered a dominant allergen (Sharma et al., 2001; Fritsche, 2003).
Several biochemical approaches have been applied, in the attempt to reduce the allergenic potential of milk proteins, especially BLG. Heat treatment, enzymatic hydrolysis, fermentation and glycation (Fritsche, 2003; Hattori et al., 2004; Ehn et al., 2005), as well as the Maillard reaction (Guanhao Bu et al., 2010), are examples. Notwithstanding, these always entail increased costs and the accumulation of unexpected by-products. Hence, how to decrease BLG content in goat milk, and thus deaden milk allergy by genetic modification, remains a major challenge among modern goat-breeders.
RNA interference (RNAi) is now a widely-used technique for the sequence-specific knockdown of target mRNA (Dorsett and Tuschl, 2004; Mittal, 2004). The stable induction of RNAi usually involves short hairpin RNA (shRNA) expressed from plasmid or viral vectors. shRNA has a stem-loop structure that mimicks endogenous microRNA (miRNA), besides sharing the same cleavage mechanism and transport pathways (McCaffrey et al., 2002; Miyagishi et al., 2004). In animal cells, mature 21–25 nt miRNAs are produced in cytoplasm, with incorporation of the antisense strand into the RNA-induced silencing complex (RISC), thereby mediating gene silencing, this including mRNA cleavage and translational repression. Lentiviral vectors are potent and efficient in enhancing the capacity for stable RNAi mediating-gene silencing in animal cells (Stewart et al., 2003; Xie et al., 2008). This capacity is critical for further application, especially gene knockdown in transgenic animals.
The aim was to obtain goat transgenic fetal fibroblasts with stable RNAi BLG-gene suppression. An in vitro cell model to mimic in vivo goat mammary epithelial cells was built by inducing BLG overexpression in goat fetal fibroblasts. The model was then used to examine the efficiency of shRNA induced BLG expression silencing, as well as the lentiviral vectors for mediating stable shRNA interference in goat fetal fibroblast cells.
The three shRNAs targeting goat BLG and a negative control shRNA were designed by Dharmacon siDESIGN Center (Dharmacon, Waltham, USA), with mRNA sequences of goat BLG(Z19569) (Table 1). The siRNAs were selected on a ranking criterion basis (Reynolds et al., 2004). The 5-nt loop (CAAGA) chosen for all the shRNAs was then synthesized (GenePharma). Annealed oligonucleotides were ligated into pGP-U6 (GenePhrama) between the Bbs and Xho sites by T4 DNA ligase (TaKaRa), according to manufacturer’s recommendations (Figure 1). Correct specific shRNA insertion was further confirmed by sequencing (Invitrogen).
Total RNA was isolated from goat mammary gland tissues, whereupon reverse transcription was carried out to prepare cDNA. A full-length wild-type goat BLG open reading frame (758 bp) was obtained by PCR, using cDNA as templates, as well as forward (5′-GCACTCGAGAGAAGCACGA-3′) and reverse (5′-GGCGGATCCCTTTA TTGCTGAAGGAGGA-3′) primers. Xho and BamH restriction sites (underlined) were respectively flanked with initiation and stop codons by PCR. The resultant PCR products were digested with Xhoand BamH, purified and cloned as overexpressional fragments into N1 vectors (Invitrogen). The final construct was termed OE-BLG.
The lentivector backbone (6553 bp) was amplified by PCR, using the pLenti6/V5-GW/LacZ vector (Invitrogen) as template, with Lenti-F (5′-CGA ATC GCG GAT CCG CGA CTT CCA GTT CAA-3′) and Lenti-R (5′-GCA GGA CCA TCG ATC TCC ACC TTC TTC TTC TAT-3′) as the respective forward and reverse primers. PCRs were according to the standard protocol for thermal stable PrimeSTAR HS DNA polymerase (TaKaRa). PCR products were separated by 1.0% agarose gel electrophoresis and stained with ethidium bromide (EB). The expected band was excised and recovered with the AxyPrep Gel Extraction Kit (AxyGene scientific, Inc). U6-shRNA2 cassettes (492 bp) were amplified by PCR, using as forward primer (5′-AAT TAA CCC TCA CTA AAG GG-3′), and reverse (5′-CCA TCG ATG TAA TAC GAC TCA CTA TAG GGC-3′). The resultant PCR products were then subcloned into the lentivector backbone by T4 ligase (Takara). The final construct was termed pLenti-U6-shRNA2 (Figure 1).
Goat embryo fibroblast (GEF) cells (donated by Prof. Feng Wang, Nanjing Agricultural University) were grown in Dulbecco’s modified Eagle’s minimal essential medium (DMEM)-F12 (Gibco) supplemented with 15% fetal bovine serum (FBS) (Gibco) at 37 °C, and 5% carbon dioxide (CO2). 24 h before transfection, 3 × 105 cells were seeded into each well of a 6-well plate (Costar), and cultured in the growth medium without antibiotics, to so achieve 90%–95% confluence at the appropriate time. For transfection, 4μg of each shRNA expression construct was used per well. Lipofectamine 2000 Reagent (Invitrogen) was used as the transfection reagent, according to manufacturer’s instructions, i.e., mingling 4 μg of DNA with 6 μL of lipofectamine per well. For co-transfection, each shRNA construct was co-transfected with N1-BLG (2:1) into GEF cell cultures using lipofectamine. After 6 h past transfection, the lipofectamine & DNA mixture was removed from the wells and replaced by a fresh medium. After 48 h past transfection, cells were assayed by quantitative RT-PCR, with non-transfected and non-shRNA vector transfected cells as controls. 293FT virus producer cells (Invitrogen) were cultured in a complete D-MEM medium containing 10% FBS supplemented with 0.1 mM MEM Non-Essential Amino Acids, 1 mM sodium pyruvate and 2 mM Lglutamine. 293FT cells were maintained in the complete medium containing 500 μg/mL Geneticin (Invitrogen).
Total RNA was isolated 48 h after transfection using Trizol (Invitrogen) according to manufacturer’s instructions. All RNA samples were reverse transcribed in a 25 μL reaction mixture at 37 °C for 15 min with M-MLV reverse transcriptase (Promega), using Oligo-dT. The cDNA samples were stored at −20 °C, prior to quantification and analysis. Primers were designed for BLG (Z19569) which span intron(s) to prevent amplification of genomic DNA, using the forward primer (5′-GGC GAG TGT GCT CAG AAG A-3′) and the reverse primer(5′-GGG CTC AGC ACT GTT TTC C-3′). Real-Time RT-PCR (ABI 7300) was performed using FastStart Universal SYBR Green Master (Roche), according to manufacturer’s protocol. PCR thermal cycle reactions were denaturation at 95 °C for 10 min followed by 40 cycles of denaturation and annealing/extension at 95 °C for 15 s and 60 °C for 1 min. Amplification specificity during real-time RT-PCR was monitored by evaluating the melting curve and examining the products of real-time RT-PCR on agarose gel for the absence of non-specific bands. The comparative Ct (threshold cycle) method (Livak and Schmittgen, 2001) was used to determine the relative amount of RNA transcripts of BLG gene present in the cells. The expression levels of each group of cells were normalized to β-actin levels, using the forward primer (5′-TGA ACC CCA AAG CCA ACC-3′) and the reverse primer (5′-AGA GGG GT A CAG GGA CAG CA-3′).
For the generation of lentivirus, 293FT cells were transfected with 9 μg of ViraPower Packaging mix (Invitrogen) along with 5 μg of pLenti-U6-shRNA2 plasmid by lipofectamine. 24 h post transfection, the transfection mix was replaced by a fresh culture medium (without antibiotics). The virus-containing supernatant was harvested 72 h post transfection, cleared by centrifugation (3000 rpm/min, 15 min, and 4 °C), and then filtered through a 0.45 μm filter (Millipore). Lentivirus aliquots were subsequently prepared and stored at −80 °C, until use in transduction. Virus generation and infection of target cells were carried out in class II biological safety cabinets in class II containment laboratories, with access restricted to authorized staff.
The day before transduction, goat embryo fibroblast cells were seeded into 6-well cell-culture plates at a density of 5 × 104 cells per well. On the day, they were transduced with 1 mL of the already described virus-containing supernatant. At 24 h post transduction, the mix was replaced with fresh cell-culture medium. 48 h post transduction, the cells were collected for RNA isolation and qRT-PCR analysis.
In order to produce stably transduced cells 48 h post transduction, 5 μg/mL of Blasticidin (Invitrogen) were added to the medium (DMEM/F12 + 15% FBS), as a means of selecting clones containing the insert. The blasticidin-containing medium was replenished every 3 days. The cells remained in the selective medium for 2 weeks, after which they were left to grow to 70% confluence before RNA isolation and qRT-PCR analysis. 2-fold serial dilutions of Blasticidin were prepared in a preliminary test, 5 μg/mL of Blasticidin being considered as the final selective concentration. After 12 days, Blasticidin-resistant GEF cell pools were established.
Real-time PCR results were analyzed by using the 2−ΔΔCT method (Livak and Schmittgen, 2001). All the experiments were performed in triplicate. Data were analyzed with the SPSS 13.0 Student t-test (SPSS Inc., Chicago, IL) to evaluate the significance of differences in gene expression. The results were expressed as mean ± STD. The level chosen to define whether treatments were significantly different from mock controls was p < 0.05.
Individual shRNA efficiency in inducing RNAi in GEF cells was tested in transiently transfected cells. Three shRNA constructs against BLG were examined (Figure 1). As EGF cells have no de novo BLG gene expression under the in vitro culture system, an in vitro model was established to investigate BLG RNAi, by subcloning the full-length cDNA fragment of goat BLG gene into an over-expression plasmid (OE-BLG), and co-transfecting with shRNA expression plasmids. Synchronous with OE-BLG plasmid co-transfection, all the anti-BLG shRNA constructs resulted in a significant reduction (p < 0.05) in the level of BLG mRNA, compared to cells that were only transfected with OE-BLG plasmids, considered as positive control (Figure 2). As expected, as negative control, a luciferase-specific shRNA (shRNA-NC) failed to reduce BLG mRNA levels, thereby showing no significant difference from cells that were only transfected with OE-BLG. All told, the interference efficiency that shRNAs induced in GEF cells was acknowledged, and the specialty of shRNA targeting confirmed.
Out of the three shRNA constructs, shRNA2 presented the highest efficiency in silencing BLG expression in GEF cells, with a reduction of approximately 90%, when compared with the positive control, whereas in the other two, although significantly high, this was less than 75% (Figure 2). Thus, shRNA2 was chosen for sequential establishment of BLG-knockdown goat-cell lines.
The shRNA2 expression cassette was removed from pGP-U6-shRNA plasmid by restriction digestion, for posterior subcloning into a lentivector system, newly denominated “plenti-U6-shRNA2”. On using these plasmids together with a virus packaging mix, shRNA2-recombined lentiviruses were produced for infecting GEF cells. After remaining 12-days in the final Blasticidin-containing selective medium, surviving GEF colonies were defined, whereas control cells without lentivirus infection had expired, thereby demonstrating the establishment of a BLG-knockdown GEF cell-line.
To confirm the integration of lentivector-mediated shRNA into cell-line genome, genome DNA was isolated from BLG-knockdown GEF cells for detection of shRNA expression cassettes. Through analysis with agarose gel electrophoresis, these transgenetic fragments were detected in PCR products, but not in non-virus-infected control GEF cells (Figure 3). Further confirmation by gel extraction and gene sequencing provided additional evidence of, shRNA-expression-cassette stable integration into the goat genome.
In order to test BLG RNAi in established BLG-knockdown GEF, OE-BLG was transfected into this cell line, while using normal GEFs as control. After 48 h of transfection, the mRNA was isolated and relative levels of BLG in each group of GEFs analyzed. Significantly, the high efficiency of RNAi against BLG in BLG-knockdown GEFs was observed, whereas in control GEFs, BLG expression remained at a relatively higher level (p < 0.01) (Figure 4). All told, these data confirmed the establishment of BLG-knockdown GEFs with the ability to express de novo shRNA against BLG.
Among all the shRNA constructs, shRNA2 presented the highest interference efficiency (Figure 2). This difference in efficiency can be explained by the interaction between target mRNA and complement RNA produced by shRNA. To investigate whether the BLG mRNA secondary structure could affect RNAi interference efficiency, this structure was calculated at 37 °C. The calculated image showed shRNA1 and shRNA3 target regions to be self-paring in a large part and folded in stem structure (Figure 5). On the contrary, the shRNA2 target region was shown to unfold and stretch in a loop structure (Figure 5). Such diversity in mRNA secondary structure indicated variable molecular behavior while complement-RNA targeting, this resulting in differences in interference efficiency.
In the present study, BLG expression silencing was with the lentivirus system mediating a stable RNAi in goat embryo fibroblasts. Lentivirus-mediated shRNA expression leads to long-term ability in silencing BLG expression. In the established BLG-knockdown GEFs, induced BLG expression was suppressed to 10% lower than in positive control cells (Figure 4). Such high efficiency had also been found in former shRNA transient transfection experiments (Figure 2). All together, the data indicate the capacity of the lentivirus system to effectively integrate sufficient DNA copies into goat genome to thus greatly deaden BLG expression, even in the disappearance of the interference caused by transient transfection.
Due to growing popularity, RNA-interference has become widely used in innumerous cases of gene silencing. Through induction by plasmids or virus vectors, RNAi has broadened its range of application (Bartel, 2004). DNA vectors facilitate the delivery of shRNA expression constructs into animal cells, to so achieve continuous long-term expression from either polor pol promoters, such as U6 (Brummelkamp et al., 2002). Besides infecting a wide range of cells in vitro and in vivo (Naldini et al., 1996), the lentivirus system is notably effective in shRNA delivery (Abbas-Terki et al., 2002). This system can also provide higher integration efficiency, whereas with conventional protocols depending on homologous recombination, integration efficiency was much lower, i.e., about 10−6. Even compared to the classical DNA microinjection (DNA-MI) technique, the system results in a four to eight-fold higher rate of transgenic animals per embryo treated (Pfeifer, 2004). In all these applications, nearly all the F0 generation animals expressed the transgene (Lois et al., 2002; Pfeifer et al., 2002). Although not with goats, lentiviral transgenesis has been applied with high efficiency in producing trangenic large farm animals, such as pigs and cattle (Hofmann et al., 2003, 2004; Whitelaw et al., 2004). Hence, by using established BLG-knockdown GEF, our research work on transgenic goat production can be further developed.
shRNA2 interference efficiency is the highest in transient transfection expression. The assumption that BLG mRNA secondary structure may affect interference efficiency was amply sustained through subsequent computer calculations. As shRNA1 and shRNA3 target regions appeared over a large part of self-paring and folds in stem structures, these could hardly unfold for complementary RNA guiding RISC complex binding and function. On the contrary, as the shRNA2 target region showed unfolding and stretching in loop structures, this secondary structure is apparently more feasible for targeting proceedures (Shao et al., 2007), thereby displaying higher interference efficiency in silencing BLG expression, whereby the assumption that secondary structure analysis of target mRNA is a credible method for predicting shRNA interference efficiency.
In conclusion, we are the first to use the RNAi mechanism via the lentivirus system to knockdown goat BLG expression. Our shRNAs successfully target BLG mRNA and reduce expression to a low level. Compared to the conventional protocol depending on homologous recombination, the letivirus system can provide higher integration efficiency, thus demonstrating its potencial as an efficient tool for transgenetic application. In addition, the establishment of BLG-knockdown GEF can be of use for further genetic engineering to produce transgenic goats.
Associate Editor: Carlos F.M. Menck
This work is financially supported by the China National Program for Transgenic Animal (08ZX08008-004).
|Abbas-Terki T,Blanco-Bose W,Deglon N,Pralong W,Aebischer P. Year: 2002Lentiviral mediated RNA interferenceHum Gene Ther132197220112542850|
|Bartel DP. Year: 2004MicroRNAs: Genomics, biogenesis, mechanism, and functionCell11628129714744438|
|Brummelkamp TR,Bernards R,Agami R. Year: 2002A system for stable expression of short interfering RNAs in mammalian cellsScience29655011910072|
|Dorsett Y,Tuschl T. Year: 2004siRNAs: Applications in functional genomics and potential as therapeuticsNat Rev Drug Discov331832915060527|
|Ehn BM,Allmere T,Telemo E,Bengtsson U,Ekstrand B. Year: 2005Modification of IgE binding to b-lactoglobulin by fermentation and proteolysis of cow’s milkJ Agr Food Chem533743374815853429|
|Fritsche R. Year: 2003Role of technology in dairy allergyAust J Dairy Technol588991|
|Hattori M,Miyakawa S,Ohama Y,Kawamura H,Yoshida T,To-o K,Kuriki T,Takahashi K. Year: 2004Reduced immunogenicity of b-lactoglobulin by conjugation with acidic oligosaccharidesJ Agr Food Chem524546455315237965|
|Hofmann A,Kessler B,Ewerling S,Weppert M,Vogg B,Ludwig H,Stojkovic M,Boelhauve M,Brem G,Wolf E. Year: 2003Efficient transgenesis in farm animals by lentiviral vectorsEMBO Rep41054105814566324|
|Hofmann A,Zakhartchenko V,Weppert M,Sebald H,Wenigerkind H,Brem G,Wolf E,Pfeifer A. Year: 2004Generation of transgenic cattle by lentiviral gene transfer into oocytesBiol Reprod7140540915044266|
|Bu G,Luo Y,Lu J,Zhang Y. Year: 2010Reduced antigenicity of b-lactoglobulin by conjugation with glucose through controlled Maillard reaction conditionsFood Agr Immunol21143156|
|Livak KJ,Schmittgen TD. Year: 2001Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT methodMethods2540240811846609|
|Lois C,Hong EJ,Pease S,Brown EJ,Baltimore D. Year: 2002Germline transmission and tissue-specific expression of transgenes delivered by lentiviral vectorsScience29586887211786607|
|Mittal V. Year: 2004Improving the efficiency of RNA interference in mammalsNat Rev Genet535536515143318|
|McCaffrey AP,Meuse L,Pham TT,Conklin DS,Hannon GJ,Kay MA. Year: 2002RNA interference in adult miceNature418383912097900|
|Miyagishi M,Sumimoto H,Miyoshi H,Kawakami Y,Taira K. Year: 2004Optimization of an siRNA-expression system with an improved hairpin and its significant suppressive effects in mammalian cellsJ Gene Med671572315241778|
|Naldini L,Blomer U,Gallay P,Ory D,Mulligan R,Gage FH,Verma IM,Trono D. Year: 1996In vivo gene delivery and stable transduction of nondividing cells by a lentiviral vectorScience2722632678602510|
|Pfeifer A,Ikawa M,Dayn Y,Verma IM. Year: 2002Transgenesis by lentiviral vectors: Lack of gene silencing in mammalian embryonic stem cells and preimplantation embryosProc Natl Acad Sci USA992140214511854510|
|Pfeifer A. Year: 2004Lentiviral transgenesisTransgen Res13513522|
|Reynolds A,Leake D,Boese Q,Scaringe S,Marshall WS,Khvorova A. Year: 2004Rational siRNA design for RNA interferenceNat Biotechnol2232633014758366|
|Shao Y,Chan CY,Maliyekkel A,Lawrence CE,Roninson I,Ding Y. Year: 2007Effect of target secondary structure on RNAi efficiencyRNA131631164017684233|
|Sharma S,Pravindra K,Betzel C,Singh TP. Year: 2001Structure and function of proteins involved in milk allergiesJ Chromatogr B756183187|
|Stewart SA,Dykxhoorn DM,Palliser D,Mizuno H,Yu EY,An DS,Sabatin DM,Chen IS,Hahn WC,Sharp PA,et al. Year: 2003Lentivirus-delivered stable gene silencing by RNAi in primary cellsRNA949350112649500|
|Whitelaw C,Radcliffe PA,Ritchie WA,Carlisle A,Ellard FM,Pena RN,Rowe J,Clark AJ,King TJ,Mitrophanous KA. Year: 2004Efficient generation of transgenic pigs using equine infectious anaemia virus (EIAV) derived vectorFEBS Lett57123323615280048|
|Xie S,Fang W,Liu Z,Wang S,Li X,Liu T,Xie W,Yao K. Year: 2008Lentivirus-mediated RNAi silencing targeting ABCC2 increasing the sensitivity of a human nasopharyngeal carcinoma cell line against cisplatinJ Translat Med655|
Keywords: RNAi, shRNA, lentivirus, BLG, goat.
Previous Document: A comparison of metrics for estimating phylogenetic signal under alternative evolutionary models.
Next Document: Electroacupuncture inhibits apoptosis in annulus fibrosis cells through suppression of the mitochond...