| SpEED: fast computation of sensitive spaced seeds. | |
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MedLine Citation:
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PMID: 21690104 Owner: NLM Status: Publisher |
Abstract/OtherAbstract:
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SUMMARY: Multiple spaced seeds represent the current state-of-the-art for similarity search in bioinformatics, with applications in various areas such as sequence alignment, read mapping, oligonucleotide design, etc. We present SpEED, a software program that computes highly sensitive multiple spaced seeds. SpEED can be several orders of magnitude faster and computes better seeds than the existing leading software programs. AVAILABILITY: The source code of SpEED is freely available at www.csd.uwo.ca/~ilie/SpEED/ CONTACT: ilie@csd.uwo.ca. |
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Authors:
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Lucian Ilie; Silvana Ilie; Anahita Mansouri Bigvand |
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Publication Detail:
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Type: JOURNAL ARTICLE Date: 2011-6-20 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: - ISSN: 1367-4811 ISO Abbreviation: - Publication Date: 2011 Jun |
Date Detail:
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Created Date: 2011-6-21 Completed Date: - Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: - |
Other Details:
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Languages: ENG Pagination: - Citation Subset: - |
Affiliation:
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Department of Computer Science, University of Western Ontario, London, ON, N6A 5B7, Canada. |
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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