| SHRiMP2: Sensitive yet Practical Short Read Mapping. | |
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MedLine Citation:
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PMID: 21278192 Owner: NLM Status: Publisher |
Abstract/OtherAbstract:
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SUMMARY: We report on a major update (version 2) of the original SHort Read Mapping Program (SHRiMP). SHRiMP2 primarily targets mapping sensitivity, and is able to achieve high accuracy at a very reasonable speed. SHRiMP2 supports both letter space and color space (AB/SOLiD) reads, enables for direct alignment of paired reads and uses parallel computation to fully utilize multi-core architectures. AVAILABILITY: SHRiMP2 executables and source code are freely available at: http://compbio.cs.toronto.edu/shrimp/ CONTACT: shrimp@cs.toronto.edu. |
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Authors:
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Matei David; Misko Dzamba; Dan Lister; Lucian Ilie; Michael Brudno |
Publication Detail:
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Type: JOURNAL ARTICLE Date: 2011-1-28 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: - ISSN: 1367-4811 ISO Abbreviation: - Publication Date: 2011 Jan |
Date Detail:
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Created Date: 2011-1-31 Completed Date: - Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: - |
Other Details:
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Languages: ENG Pagination: - Citation Subset: - |
Affiliation:
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Department of Computer Science, Princeton University. |
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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