Document Detail


Rosette tracker: an open source image analysis tool for automatic quantification of genotype effects.
MedLine Citation:
PMID:  22942389     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Image analysis of Arabidopsis (Arabidopsis thaliana) rosettes is an important nondestructive method for studying plant growth. Some work on automatic rosette measurement using image analysis has been proposed in the past but is generally restricted to be used only in combination with specific high-throughput monitoring systems. We introduce Rosette Tracker, a new open source image analysis tool for evaluation of plant-shoot phenotypes. This tool is not constrained by one specific monitoring system, can be adapted to different low-budget imaging setups, and requires minimal user input. In contrast with previously described monitoring tools, Rosette Tracker allows us to simultaneously quantify plant growth, photosynthesis, and leaf temperature-related parameters through the analysis of visual, chlorophyll fluorescence, and/or thermal infrared time-lapse sequences. Freely available, Rosette Tracker facilitates the rapid understanding of Arabidopsis genotype effects.
Authors:
Jonas De Vylder; Filip Vandenbussche; Yuming Hu; Wilfried Philips; Dominique Van Der Straeten
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't     Date:  2012-08-31
Journal Detail:
Title:  Plant physiology     Volume:  160     ISSN:  1532-2548     ISO Abbreviation:  Plant Physiol.     Publication Date:  2012 Nov 
Date Detail:
Created Date:  2012-11-05     Completed Date:  2013-04-19     Revised Date:  2013-11-05    
Medline Journal Info:
Nlm Unique ID:  0401224     Medline TA:  Plant Physiol     Country:  United States    
Other Details:
Languages:  eng     Pagination:  1149-59     Citation Subset:  IM    
Affiliation:
Department of Telecommunications and Information Processing, Ghent University, 9000 Ghent, Belgium.
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MeSH Terms
Descriptor/Qualifier:
Arabidopsis / anatomy & histology*,  genetics*,  growth & development
Automation
Calibration
Chlorophyll / metabolism
Fluorescence
Genotype
Image Processing, Computer-Assisted / methods*
Plant Leaves / anatomy & histology*,  genetics*,  growth & development
Public Sector
Software*
Spectrophotometry, Infrared
Temperature
Time-Lapse Imaging
Chemical
Reg. No./Substance:
1406-65-1/Chlorophyll
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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