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Role of rhinovirus C in apparently life-threatening events in infants, Spain.
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PMID:  19788827     Owner:  NLM     Status:  MEDLINE    
To assess whether infants hospitalized after an apparently life-threatening event had an associated respiratory virus infection, we analyzed nasopharyngeal aspirates from 16 patients. Nine of 11 infants with positive virus results were infected by rhinoviruses. We detected the new genogroup of rhinovirus C in 6 aspirates.
Cristina Calvo; M Luz Garcia; Francisco Pozo; Noelia Reyes; Pilar Pérez-Breña; Inmaculada Casas
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't    
Journal Detail:
Title:  Emerging infectious diseases     Volume:  15     ISSN:  1080-6059     ISO Abbreviation:  Emerging Infect. Dis.     Publication Date:  2009 Sep 
Date Detail:
Created Date:  2009-09-30     Completed Date:  2010-01-05     Revised Date:  2013-05-31    
Medline Journal Info:
Nlm Unique ID:  9508155     Medline TA:  Emerg Infect Dis     Country:  United States    
Other Details:
Languages:  eng     Pagination:  1506-8     Citation Subset:  IM    
Hospital Severo Ochoa, Leganes, Madrid, Spain.
Data Bank Information
Bank Name/Acc. No.:
GENBANK/EU697826;  EU697832;  FJ841954;  FJ841955;  FJ841956;  FJ841957;  FJ841959;  FJ841960;  FJ841961
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MeSH Terms
Infant, Newborn
Molecular Sequence Data
Nasopharynx / virology
Picornaviridae Infections* / epidemiology,  physiopathology,  virology
Respiratory Tract Infections* / epidemiology,  physiopathology,  virology
Reverse Transcriptase Polymerase Chain Reaction
Rhinovirus* / classification,  genetics,  isolation & purification,  pathogenicity
Sequence Analysis, DNA
Severity of Illness Index*
Spain / epidemiology

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine

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Journal Information
Journal ID (nlm-ta): Emerg Infect Dis
Journal ID (publisher-id): EID
ISSN: 1080-6040
ISSN: 1080-6059
Publisher: Centers for Disease Control and Prevention
Article Information
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Print publication date: Month: 9 Year: 2009
Volume: 15 Issue: 9
First Page: 1506 Last Page: 1508
ID: 2819893
PubMed Id: 19788827
Publisher Id: 09-0493
DOI: 10.3201/1509.090493

Role of Rhinovirus C in Apparently Life-Threatening Events in Infants, Spain Alternate Title:Rhinovirus C and Apparently Life-Threatening Events
Cristina Calvo
M. Luz Garc?a
Francisco Pozo
Noelia Reyes
Pilar P?rez-Bre?a
Inmaculada Casas
Hospital Severo Ochoa, Legan?s, Madrid, Spain (C. Calvo, M.L. Garc?a)
National Center for Microbiology, Institute of Health Carlos III, Madrid (F. Pozo, N. Reyes, P. P?rez-Bre?a, I. Casas).
Correspondence: Address for correspondence: Cristina Calvo, Hospital Severo Ochoa, Avda. Orellana, s.n.; 28911 Legan?s; Madrid; Spain; email:

Human rhinovirus (HRV) is 1 of the most common agents associated with upper and lower respiratory tract infections in children and infants (1) and is a major trigger of asthma exacerbations (2). Recently, molecular methods have shown substantial phenotypic variation of HRV and identified a novel HRV genogroup provisionally named HRV-C (3). Severe asthma exacerbations in children have been associated with this new genogroup of rhinoviruses. Genogroup C could be resistant to a new candidate group of antipicornavirus drugs, including pleconaril (4).

Apparently life-threatening events (ALTEs) in infants are associated with bronchiolitis or infections in up to 6% of patients by diagnosis after hospital admission (5). We assessed the relation between ALTEs and respiratory virus infection in a secondary hospital in Spain.

The Study

Our study was part of a systematic prospective study to assess the epidemiology of respiratory virus infections in children admitted to the Severo Ochoa Hospital (Legan?s, Madrid Province, Spain).We conducted a specific study to determine the incidence of respiratory virus infections in all infants admitted after ALTEs during November 2004?December 2008. An ALTE in a child <1 year of age was defined as an episode that is frightening to the observer and characterized by some combination of apnea, color change, marked change in muscle tone, choking, or gagging so the observer fears the infant has died (6).

Nasopharyngeal aspirate (NPA) specimens were acquired from each eligible patient at the time of hospital admission (on Monday?Friday). Samples were sent for virologic study to the Influenza and Respiratory Virus Laboratory (National Centre for Microbiology, Institute of Health Carlos III, Spain). Specimens were processed within 24 hours after collection.

Total nucleic acids were extracted from 200-?L aliquots by using a QIAamp MinElute Virus Spin Kit in a QIAcube automated extractor (QIAGEN, Valencia, CA, USA). Simple or multiplex reverse transcription?nested PCR assays (RT-PCR) previously described (7?9) were used to assess the virus diagnosis, including 16 respiratory viruses or groups of viruses. Degenerated primers for HRV and enteroviruses were designed between the 3? end of the 5? noncoding region (NCR) and the viral protein (VP) 4/VP2 polyprotein gene (TCIGGIARYTTCCASYACCAICC-3? and CTGTGTTGAWACYTGAGCICCCA-3?). HRVs from positive samples were identified by sequencing and phylogenetic analysis of these sequences. Amplified products (about 500 bp, depending on HRV serotype) were purified and sequenced in both directions by using an automated ABI PRISM 377 model sequencer. Partial sequences of HRV have been submitted to GenBank (accession nos. FJ841954?FJ841957, FJ841959?FJ841961, EU697826, and EU697832). Appropriate precautions were implemented to avoid false-positive results by carryover contamination. Positive results were confirmed by testing a second aliquot of the sample stored at ?70?C.

Sixteen infants (8 of each sex) were enrolled in the study. All patients were <5 months of age (range 7 days?5 months, mean age 7.6 weeks, median 4 weeks). Twelve infants had rhinorrea, cough, and distress signs (Table). A total of 11 (69%) NPA specimens were positive for at least 1 viral agent. For 9 of these patients, positive results for HRV were confirmed, and for the other 2 patients, respiratory syncytial virus was detected.

Phylogenetic analyses of 9 sequences obtained from patients showed distribution of HRV in 3 clusters. Three sequences were included in previously characterized clades, defined by HRV group A (HRV-A, SO4923?EU697826) and B (HRV-B, SO3970?FJ841954 and SO4998?EU697832). Sequence from patient SO4923 had a low sequence similarity with the other serotypes of HRV-A. In contrast, sequences from patients SO3970 and SO4998 were closely related to HRV-35 and HRV-79, respectively. Six sequences were included in the third group corresponding to the new HRV-C: SO5854, SO6666, SO5797, SO6819, SO5986, SO6813- FJ841955-57 and FJ841959-61) (3,10) (Figure). Different genotypes (collectively called HRV-Cs) were identified in 6 NPA specimens from children with ALTEs (67% of total HRV). Two received cardiopulmonary resuscitation at home; for these 2 patients, a respiratory syncytial virus and an HRV-C were identified. All 16 children survived.


The most common discharge diagnoses reported for ALTEs are gastroesophageal reflux disease (GERD), unknown causes, seizures, and lower respiratory tract infections (11). Our series suggests that ALTEs of previously unknown etiology could be related to HRV infections. Rhinovirus infections are known to be a major cause of illness and hospital admission for young children, particularly infants <2 years of age (12). Detection of viral genomes by nested RT-PCR in NPA specimens led us to analyze the effect of HRV infections in different clinical situations. Respiratory infections associated with HRV might play a major role in young infants, probably with few clinical signs, and might contribute to apnea as a first manifestation. GERD is the most frequent hospital discharge diagnosis in published series (5,11). For our patients, GERD also was the most frequent clinical diagnosis (9 patients), but for 7 of them, a respiratory virus was identified. We cannot conclude whether GERD is a risk factor for apnea or whether signs are so nonspecific that diagnoses could be confused.

Alternatively, the new HRV-C group could account for as many as a quarter or even half of HRV infections (4,13). In children, it has been associated with bronchiolitis, wheezing, and asthma exacerbations severe enough to require hospitalization; the percentage of these children with hypoxia was substantial (13). In a case?control study, Khetsuriani et al. (4) found HRV-C only in case-patients, supporting the pathogenic role of this genogroup. They considered that HRV-C infections could be associated with more severe clinical manifestations than infections with other HRV genogroups A and B. These data could also support the role of HRV-C in infants with ALTEs found in this work.

Although we had no control group for our patients, we recently published a study of a cohort of 316 newborns up to 6 months of age tested weekly for respiratory diseases (mainly upper respiratory tract infections), coincident in age and time with our patients (14). HRV was present in 5 (3.6%) of 72 infants tested. Two viruses were genetically identified as HRV-C, demonstrating they form distinct genetic clusters, and no genetic similarity was obtained with the ALTE?related HRV-C viruses. In addition, a second group of asymptomatic children of different ages but in coincident epidemic seasons was studied. The group of children with HRV was substantially smaller than the group of children with respiratory disease (15).

Viral infections could play a major role in ALTEs. Rhinoviruses, especially HRV-C, could cause a respiratory infection with few symptoms in young infants and could trigger ALTEs in this age group. Therefore, HRVs and posterior genotyping should be included in studies of the etiology of ALTEs to help identify the true relevance of HRV-C infection to these episodes.


Suggested citation for this article: Calvo C, Garc?a ML, Pozo F, Reyes N, P?rez-Bre?a P, Casas I. Role of rhinovirus C in apparently life-threatening events in infants, Spain. Emerg Infect Dis [serial on the Internet]. 2009 Sep [date cited]. Available from


We thank Lola Lopez-Valero, Nieves Cruz, Monica S?nchez, and Ana Calder?n for technical assistance.

This work was supported by grant PI060532 by Fondo de Investigaciones Sanitarias, Institute of Health Carlos III. Research on viral respiratory infections is carried out in collaboration with the Influenza and Respiratory Viruses Laboratory at the National Center of Microbiology (ISCIII) and supported by the Health Research Fund.

Dr Calvo?is chief clinician of pediatrics at Hospital Severo Ochoa, Legan?s, Madrid, Spain. Her research interests include infectious diseases in children.

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[Figure ID: F1]

Phylogenetic analysis of 5? noncoding region and viral protein (VP) 4/2 coding region of 9 human rhinoviruses (HRVs) identified in infants with apparently life-threatening events in Spain, November 2004?December 2008. Phylogeny of nucleotide sequences (?492 bp) was reconstructed with neighbor-joining analysis by applying a Jukes-Cantor model; scale bar indicates nucleotide substitutions per site. Included for reference are sequences belonging to the novel genotype reported previously (QPM and 024, 025, 026 [11]) and all HRV-A and -B serotypes available in GenBank. Significant bootstrapping is indicated.

[TableWrap ID: T1] Table  Characteristics of infants with ALTEs, Spain, November 2004?December 2008*
Laboratory no. Sex/age, wk Admission date Clinical signs Discharge diagnosis Virus Prematurity
SO3970 M/4 2004 Nov Cough, rhinorrea, loss of consciousness, flaccidity Choking HRV-B No
SO4891 M/4 2005 Oct Cyanosis, loss of consciousness, flaccidity Cyanosis No Yes (35 wk)
SO4923 M/15 2005 Nov Apnea, flushing Cyanosis + URTI HRV-A Yes (36 wk)
SO4998 F/8 2005 Nov Choking, flushing, distress URTI + GERD HRV-B No
SO5260 F/9 2006 Apr Cough, choking GERD No No
SO5355 M/6 2006 Jun Apnea, cyanosis URTI + GERD No No
SO5529 F/4 2006 Nov Apnea, congestion, cyanosis Bronchiolitis + GERD RSV No
SO5749 M/24 2007 Mar Choking, cyanosis Wheezing No No
SO5797 F/6 2007 Mar Apnea, flushing Choking + GERD HRV-C No
SO5854 F/6 2007 Apr Cough, rhinorrea, apnea URTI + GERD HRV-C No
SO5896 M/13 2007 Sep Apnea, rhinorrea Bronchiolitis + GERD HRV-C No
SO6012 F/7 2007 Oct Cough, distress, apnea URTI RSV-A No
SO6666 M/4 2008 Oct Cyanosis, choking Choking HRV-C No
SO6813 F/6 2008 Nov Apnea, flaccidity Apnea + GERD HRV-C No
SO6819 M/6 2008 Nov Cough, rhinorrea, flushing URTI + GERD HRV-C No
SO6816 F/1 2009 Jan Choking, flushing Choking No No

*ALTEs, acute life-threatening events; URTI, upper respiratory tract infection; RSV, respiratory syncytial virus; HRV, human rhinovirus; EV, enterovirus; GERD, gastroesophageal reflux disease.

Article Categories:
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Keywords: Keywords: Picornavirus, rhinovirus, HRV-C, infants, apparent life-threatening events, viruses, dispatch.

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