Document Detail


Retrieval of the species Alteromonas tetraodonis Simidu et al. 1990 as Pseudoalteromonas tetraodonis comb. nov. and emendation of description.
MedLine Citation:
PMID:  11411675     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
A polyphasic taxonomy study was undertaken of three strains of Pseudoalteromonas haloplanktis subsp. tetraodonis (Simidu et al. 1990) Gauthier et al. 1995. DNA was prepared from each of the strains and genomic relatedness was measured by DNA-DNA hybridization. Strains KMM 458T and IAM 14160T shared 99% genetic relatedness, but were only 48-49% related to the type strain of Pseudoalteromonas haloplanktis subsp. haloplanktis, IAM 12915T. The third strain, P. haloplanktis subsp. tetraodonis A-M, showed 83% genetic similarity with P. haloplanktis subsp. haloplanktis IAM 12915T and 32% with KMM 458T. From these results, it is concluded that strains KMM 458T and IAM 14160T comprise a separate species, originally described as Alteromonas tetraodonis, whereas strain A-M belongs to the species Pseudoalteromonas haloplanktis. Based on phenotypic and chemotaxonomic data, genomic fingerprint patterns, DNA-DNA hybridization data and phylogenetic analysis of 16S rRNA, it is proposed that the species Alteromonas tetraodonis be retrieved and recognized as Pseudoalteromonas tetraodonis comb. nov. (type strain IAM 14160T = KMM 458T).
Authors:
E P Ivanova; L A Romanenko; M H Matté; G R Matté; A M Lysenko; U Simidu; K Kita-Tsukamoto; T Sawabe; M V Vysotskii; G M Frolova; V Mikhailov; R Christen; R R Colwell
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Publication Detail:
Type:  Comparative Study; Journal Article; Research Support, Non-U.S. Gov't    
Journal Detail:
Title:  International journal of systematic and evolutionary microbiology     Volume:  51     ISSN:  1466-5026     ISO Abbreviation:  Int. J. Syst. Evol. Microbiol.     Publication Date:  2001 May 
Date Detail:
Created Date:  2001-06-19     Completed Date:  2001-07-12     Revised Date:  2006-11-15    
Medline Journal Info:
Nlm Unique ID:  100899600     Medline TA:  Int J Syst Evol Microbiol     Country:  England    
Other Details:
Languages:  eng     Pagination:  1071-8     Citation Subset:  IM    
Affiliation:
Pacific Institute of Bioorganic Chemistry, Far-Eastern Branch, Russian Academy of Sciences, Vladivostok. eivanova@swin.edu.au
Data Bank Information
Bank Name/Acc. No.:
GENBANK/AF214729;  AF214730
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MeSH Terms
Descriptor/Qualifier:
Alteromonas / classification*,  genetics
DNA, Bacterial / genetics
DNA, Ribosomal / genetics
Gammaproteobacteria / classification*,  genetics
Molecular Sequence Data
Nucleic Acid Hybridization
Phenotype
Phylogeny*
Polymerase Chain Reaction
RNA, Ribosomal, 16S / genetics
Chemical
Reg. No./Substance:
0/DNA, Bacterial; 0/DNA, Ribosomal; 0/RNA, Ribosomal, 16S

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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