Document Detail JAF: reference information and tools for proteomics.
MedLine Citation:
PMID:  16434446     Owner:  NLM     Status:  MEDLINE    
SUMMARY: Analysis of proteomics data, specifically mass spectrometry data, commonly relies on libraries of known information such as atomic masses, known stable isotopes, atomic compositions of amino acids, observed modifications of known amino acids and ion masses that directly correspond to known amino acid sequences. The Java Analysis Framework (JAF) for proteomics provides a freely usable, open-source library of Java code that abstracts all of the aforementioned data, enabling more rapid development of proteomics tools. The JAF also includes several user tools that can be run directly from a web browser.
AVAILABILITY: The current version and an archive of all older versions of the Java Analysis Framework for Proteomics is freely available, including complete source-code, at
J A Falkner; J W Falkner; P C Andrews
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Extramural     Date:  2006-01-24
Journal Detail:
Title:  Bioinformatics (Oxford, England)     Volume:  22     ISSN:  1367-4803     ISO Abbreviation:  Bioinformatics     Publication Date:  2006 Mar 
Date Detail:
Created Date:  2006-02-23     Completed Date:  2006-04-18     Revised Date:  2013-05-20    
Medline Journal Info:
Nlm Unique ID:  9808944     Medline TA:  Bioinformatics     Country:  England    
Other Details:
Languages:  eng     Pagination:  632-3     Citation Subset:  IM    
Department Biological Chemistry, University of Michigan, Ann Arbor, MI 48104, USA.
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MeSH Terms
Database Management Systems*
Databases, Protein*
Documentation / methods*
Peptide Mapping / methods*
Proteins / analysis,  chemistry*,  classification
Proteomics / methods
Sequence Analysis, Protein / methods*
User-Computer Interface
Grant Support
Reg. No./Substance:

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