| Persistence of host-specific Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity. | |
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MedLine Citation:
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PMID: 17598108 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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Host-specific Bacteroides-Prevotella 16S rRNA genetic markers are promising alternative indicators for identifying the sources of fecal pollution because of their high abundance in the feces of warm-blooded animals and high host specificity. However, little is known about the persistence of these genetic markers in environments after being released into environmental waters. The persistence of feces-derived four different host-specific Bacteroides-Prevotella 16S rRNA genetic makers (total, human-, cow-, and pig-specific) in environmental waters was therefore investigated at different incubation temperatures (4, 10, 20, and 30 degrees C) and salinities (0, 10, 20, and 30 ppt) and then compared with the survival of conventional fecal-indicator organisms. The host-specific genetic markers were monitored by using real-time polymerase chain reaction (PCR) assays with specific primer sets. Each host-specific genetic marker showed similar responses in non-filtered river water and seawater: They persisted longer at lower temperatures and higher salinities. In addition, these markers did not increase in all conditions tested. Decay rates for indicator organisms were lower than those for host-specific genetic markers at temperature above 10 degrees C. Furthermore, we investigated whether the PCR-detectable 16S rRNA genetic markers reflect the presence of live target cells or dead target cells in environmental waters. The result revealed that the detection of the Bacteroides-Prevotella 16S rRNA genetic markers in environmental waters mainly reflected the presence of 'viable but non-culturable' Bacteroides-Prevotella cells. These findings indicate that seasonal and geographical variations in persistence of these host-specific Bacteroides-Prevotella 16S rRNA genetic markers must be considered when we use them as alternative fecal indicators in environmental waters. |
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Authors:
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Satoshi Okabe; Yoko Shimazu |
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Publication Detail:
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Type: Journal Article; Research Support, Non-U.S. Gov't Date: 2007-06-28 |
Journal Detail:
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Title: Applied microbiology and biotechnology Volume: 76 ISSN: 0175-7598 ISO Abbreviation: Appl. Microbiol. Biotechnol. Publication Date: 2007 Sep |
Date Detail:
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Created Date: 2007-08-29 Completed Date: 2007-11-13 Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 8406612 Medline TA: Appl Microbiol Biotechnol Country: Germany |
Other Details:
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Languages: eng Pagination: 935-44 Citation Subset: IM |
Affiliation:
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Department of Urban and Environmental Engineering, Graduate School of Engineering, Hokkaido University, North-13, West-8, Kita-ku, Sapporo, 060-8628, Japan. sokabe@eng.hokudai.ac.jp |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Animals Bacteroides / genetics, isolation & purification* Cattle Colony Count, Microbial DNA, Bacterial / chemistry, genetics Enterobacteriaceae / isolation & purification Environmental Monitoring / methods* Feces / microbiology* Genetic Markers / genetics Humans Polymerase Chain Reaction Prevotella / genetics, isolation & purification* RNA, Ribosomal, 16S / analysis*, chemistry, genetics Rivers Seawater Swine Temperature Time Factors Water Microbiology* |
| Chemical | |
Reg. No./Substance:
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0/DNA, Bacterial; 0/Genetic Markers; 0/RNA, Ribosomal, 16S |
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