Document Detail


Parameter space exploration within dynamic simulations of signaling networks.
MedLine Citation:
PMID:  23311364     Owner:  NLM     Status:  In-Data-Review    
Abstract/OtherAbstract:
We started offering an introduction to very basic aspects of molecular biology, for the reader coming from computer sciences, information technology, mathematics. Similarly we offered a minimum of information about pathways and networks in graph theory, for a reader coming from the bio-medical sector. At the crossover about the two different types of expertise, we offered some definition about Systems Biology. The core of the article deals with a Molecular Interaction Map (MIM), a network of biochemical interactions involved in a small signaling-network sub-region relevant in breast cancer. We explored robustness/sensitivity to random perturbations. It turns out that our MIM is a non-isomorphic directed graph. For non physiological directions of propagation of the signal the network is quite resistant to perturbations. The opposite happens for biologically significant directions of signal propagation. In these cases we can have no signal attenuation, and even signal amplification. Signal propagation along a given pathway is highly unidirectional, with the exception of signal-feedbacks, that again have a specific biological role and significance. In conclusion, even a relatively small network like our present MIM reveals the preponderance of specific biological functions over unspecific isomorphic behaviors. This is perhaps the consequence of hundreds of millions of years of biological evolution.
Authors:
Cristina De Ambrosi; Annalisa Barla; Lorenzo Tortolina; Nicoletta Castagnino; Raffaele Pesenti; Alessandro Verri; Alberto Ballestrero; Franco Patrone; Silvio Parodi
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Publication Detail:
Type:  Journal Article    
Journal Detail:
Title:  Mathematical biosciences and engineering : MBE     Volume:  10     ISSN:  1551-0018     ISO Abbreviation:  Math Biosci Eng     Publication Date:  2013 Feb 
Date Detail:
Created Date:  2013-01-14     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  101197794     Medline TA:  Math Biosci Eng     Country:  United States    
Other Details:
Languages:  eng     Pagination:  103-20     Citation Subset:  IM    
Affiliation:
DIBRIS Department of Informatics, Bioengineering, Robotics and Systems Engineering, Universita degli Studi di Genova - Via Balbi, 5 - 16126 Genova, Italy. cristina.deambrosi@unige.it.
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