| PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI. | |
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MedLine Citation:
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PMID: 19307724 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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The Protein Data Bank file format is the format most widely used by protein crystallographers and biologists to disseminate and manipulate protein structures. Despite this, there are few user-friendly software packages available to efficiently edit and extract raw information from PDB files. This limitation often leads to many protein crystallographers wasting significant time manually editing PDB files. PDB Editor, written in Java Swing GUI, allows the user to selectively search, select, extract and edit information in parallel. Furthermore, the program is a stand-alone application written in Java which frees users from the hassles associated with platform/operating system-dependent installation and usage. PDB Editor can be downloaded from http://sourceforge.net/projects/pdbeditorjl/. |
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Authors:
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Jonas Lee; Sung Hou Kim |
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Publication Detail:
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Type: Journal Article Date: 2009-03-19 |
Journal Detail:
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Title: Acta crystallographica. Section D, Biological crystallography Volume: 65 ISSN: 1399-0047 ISO Abbreviation: Acta Crystallogr. D Biol. Crystallogr. Publication Date: 2009 Apr |
Date Detail:
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Created Date: 2009-03-24 Completed Date: 2009-07-17 Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 9305878 Medline TA: Acta Crystallogr D Biol Crystallogr Country: Denmark |
Other Details:
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Languages: eng Pagination: 399-402 Citation Subset: IM |
Affiliation:
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Department of Chemistry, University of California, Berkeley, California 94720-5230, USA. |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Computer Graphics* Crystallography, X-Ray Databases, Protein* Internet Programming Languages* Protein Conformation User-Computer Interface* |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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