Document Detail

Oxygen minimum zones harbour novel viral communities with low diversity.
MedLine Citation:
PMID:  23039259     Owner:  NLM     Status:  Publisher    
Oxygen minimum zones (OMZs) are oceanographic features that affect ocean productivity and biodiversity, and contribute to ocean nitrogen loss and greenhouse gas emissions. Here we describe the viral communities associated with the Eastern Tropical South Pacific (ETSP) OMZ off Iquique, Chile for the first time through abundance estimates and viral metagenomic analysis. The viral-to-microbial ratio (VMR) in the ETSP OMZ fluctuated in the oxycline and declined in the anoxic core to below one on several occasions. The number of viral genotypes (unique genomes as defined by sequence assembly) ranged from 2040 at the surface to 98 in the oxycline, which is the lowest viral diversity recorded to date in the ocean. Within the ETSP OMZ viromes, only 4.95% of genotypes were shared between surface and anoxic core viromes using reciprocal BLASTn sequence comparison. ETSP virome comparison with surface marine viromes (Sargasso Sea, Gulf of Mexico, Kingman Reef, Chesapeake Bay) revealed a dissimilarity of ETSP OMZ viruses to those from other oceanic regions. From the 1.4 million non-redundant DNA sequences sampled within the altered oxygen conditions of the ETSP OMZ, more than 97.8% were novel. Of the average 3.2% of sequences that showed similarity to the SEED non-redundant database, phage sequences dominated the surface viromes, eukaryotic virus sequences dominated the oxycline viromes, and phage sequences dominated the anoxic core viromes. The viral community of the ETSP OMZ was characterized by fluctuations in abundance, taxa and diversity across the oxygen gradient. The ecological significance of these changes was difficult to predict; however, it appears that the reduction in oxygen coincides with an increased shedding of eukaryotic viruses in the oxycline, and a shift to unique viral genotypes in the anoxic core.
Noriko Cassman; Alejandra Prieto-Davó; Kevin Walsh; Genivaldo G Z Silva; Florent Angly; Sajia Akhter; Katie Barott; Julia Busch; Tracey McDole; J Matthew Haggerty; Dana Willner; Gadiel Alarcón; Osvaldo Ulloa; Edward F Delong; Bas E Dutilh; Forest Rohwer; Elizabeth A Dinsdale
Related Documents :
12958269 - Use of loop-mediated isothermal amplification of the is900 sequence for rapid detection...
19538459 - Genetic heterogeneity of betanodaviruses in juvenile production trials of pacific bluef...
9620369 - Evaluation of pcr in detection of mycobacterium tuberculosis from formalin-fixed, paraf...
1583889 - Polymerase chain reaction/sequencing analysis of ras mutations in paraffin-embedded tis...
23874559 - Identification of a novel cetacean polyomavirus from a common dolphin (delphinus delphi...
10952449 - Isolation and characterization of porcine circovirus type 2 from pigs showing signs of ...
21645299 - Emerging roles of chicken and viral micrornas in avian disease.
1538779 - The c. elegans genome sequencing project: a beginning.
18380659 - Mitochondrial genomes of the sheep blowfly, lucilia sericata, and the secondary blowfly...
Publication Detail:
Type:  JOURNAL ARTICLE     Date:  2012-9-11
Journal Detail:
Title:  Environmental microbiology     Volume:  -     ISSN:  1462-2920     ISO Abbreviation:  Environ. Microbiol.     Publication Date:  2012 Sep 
Date Detail:
Created Date:  2012-10-8     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  100883692     Medline TA:  Environ Microbiol     Country:  -    
Other Details:
Languages:  ENG     Pagination:  -     Citation Subset:  -    
Copyright Information:
© 2012 Society for Applied Microbiology and Blackwell Publishing Ltd.
Department of Biology, San Diego State University, San Diego, CA, 92182, USA; Facultad de Química, Unidad Sisal, Universidad Nacional Autónoma de México Sisal, Yucatán, 97356, México.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine

Previous Document:  Harnessing the power of crowds: crowdsourcing as a novel research method for evaluation of acne trea...
Next Document:  "Souls of the ancestor that knock us out" and other tales. A qualitative study to identify demand-si...