| OxfordGrid: a web interface for pairwise comparative map views. | |
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MedLine Citation:
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PMID: 16204347 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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SUMMARY: OxfordGrid is a web application and database schema for storing and interactively displaying genetic map data in a comparative, dot-plot, fashion. Its display is composed of a matrix of cells, each representing a pairwise comparison of mapped probe data for two linkage groups or chromosomes. These are arranged along the axes with one forming grid columns and the other grid rows with the degree and pattern of synteny/colinearity between the two linkage groups manifested in the cell's dot density and structure. A mouse click over the selected grid cell launches an image map-based display for the selected cell. Both individual and linear groups of mapped probes can be selected and displayed. Also, configurable links can be used to access other web resources for mapped probe information. AVAILABILITY: OxfordGrid is implemented in C#/ASP.NET and the package, including MySQL schema creation scripts, is available at ftp://cggc.agtec.uga.edu/OxfordGrid/. |
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Authors:
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Hongyu Yang; Alan R Gingle |
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Publication Detail:
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Type: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S. Date: 2005-10-04 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: 21 ISSN: 1367-4803 ISO Abbreviation: Bioinformatics Publication Date: 2005 Dec |
Date Detail:
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Created Date: 2005-11-23 Completed Date: 2006-01-25 Revised Date: 2013-05-20 |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: England |
Other Details:
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Languages: eng Pagination: 4307-8 Citation Subset: IM |
Affiliation:
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Center for Applied Genetic Technologies, University of Georgia 111 Riverbend Road, Athens, GA 30602, USA. |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Algorithms Chromosome Mapping / methods* Computational Biology / methods* Data Interpretation, Statistical Database Management Systems Databases, Genetic Genetic Linkage Information Storage and Retrieval Internet Software User-Computer Interface |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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