| Mutational profile of GNAQQ209 in human tumors. | |
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MedLine Citation:
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PMID: 19718445 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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BACKGROUND: Frequent somatic mutations have recently been identified in the ras-like domain of the heterotrimeric G protein alpha-subunit (GNAQ) in blue naevi 83%, malignant blue naevi (50%) and ocular melanoma of the uvea (46%). The mutations exclusively affect codon 209 and result in GNAQ constitutive activation which, in turn, acts as a dominant oncogene. METHODOLOGY: To assess if the mutations are present in other tumor types we performed a systematic mutational profile of the GNAQ exon 5 in a panel of 922 neoplasms, including glioblastoma, gastrointestinal stromal tumors (GIST), acute myeloid leukemia (AML), blue naevi, skin melanoma, bladder, breast, colorectal, lung, ovarian, pancreas, and thyroid carcinomas. PRINCIPAL FINDINGS: We detected the previously reported mutations in 6/13 (46%) blue naevi. Changes affecting Q209 were not found in any of the other tumors. Our data indicate that the occurrence of GNAQ mutations display a unique pattern being present in a subset of melanocytic tumors but not in malignancies of glial, epithelial and stromal origin analyzed in this study. |
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Authors:
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Simona Lamba; Lara Felicioni; Fiamma Buttitta; Fonnet E Bleeker; Sara Malatesta; Vincenzo Corbo; Aldo Scarpa; Monica Rodolfo; Margaret Knowles; Milo Frattini; Antonio Marchetti; Alberto Bardelli |
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Publication Detail:
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Type: Journal Article; Research Support, Non-U.S. Gov't Date: 2009-08-31 |
Journal Detail:
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Title: PloS one Volume: 4 ISSN: 1932-6203 ISO Abbreviation: PLoS ONE Publication Date: 2009 |
Date Detail:
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Created Date: 2009-08-31 Completed Date: 2010-01-19 Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 101285081 Medline TA: PLoS One Country: United States |
Other Details:
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Languages: eng Pagination: e6833 Citation Subset: IM |
Affiliation:
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Laboratory of Molecular Genetics, Institute for Cancer Research and Treatment, University of Torino Medical School, University of Torino, Medical School Candiolo, Torino, Italy. |
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| MeSH Terms | |
Descriptor/Qualifier:
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Heterotrimeric GTP-Binding Proteins
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genetics* Humans Mutation* Neoplasms / classification, genetics* |
| Chemical | |
Reg. No./Substance:
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EC 3.6.5.1/Heterotrimeric GTP-Binding Proteins |
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| Full Text | |
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Journal Information Journal ID (nlm-ta): PLoS One Journal ID (publisher-id): plos Journal ID (pmc): plosone ISSN: 1932-6203 Publisher: Public Library of Science, San Francisco, USA |
Article Information Download PDF ![]() Lamba et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Received Day: 18 Month: 5 Year: 2009 Accepted Day: 14 Month: 7 Year: 2009 collection publication date: Year: 2009 Electronic publication date: Day: 31 Month: 8 Year: 2009 Volume: 4 Issue: 8 E-location ID: e6833 ID: 2730032 PubMed Id: 19718445 Publisher Id: 09-PONE-RA-10446R1 DOI: 10.1371/journal.pone.0006833 |
| Mutational Profile of GNAQQ209 in Human Tumors Alternate Title:GNAQQ209 in Human Tumors | |
| Simona Lamba1 | |
| Lara Felicioni2 | |
| Fiamma Buttitta2 | |
| Fonnet E. Bleeker3 | |
| Sara Malatesta2 | |
| Vincenzo Corbo4 | |
| Aldo Scarpa4 | |
| Monica Rodolfo5 | |
| Margaret Knowles6 | |
| Milo Frattini57 | |
| Antonio Marchetti2 | |
| Alberto Bardelli18* | |
| J?rg Hoheiseledit1 |
Role: Editor |
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1Laboratory of Molecular Genetics, Institute for Cancer Research and Treatment, University of Torino Medical School, University of Torino, Medical School Candiolo (TO), Torino, Italy |
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2Clinical Research Center, Center of Excellence on Aging, University-Foundation, Chieti, Italy |
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3Neurosurgical Center Amsterdam, Academic Medical Center (AMC), University of Amsterdam, Amsterdam, The Netherlands |
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4Department of Pathology, Section of Anatomic Pathology, University of Verona, Verona, Italy |
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5Department of Experimental Oncology, Istituto Nazionale Tumori, Milan, Italy |
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6Section of Experimental Oncology, Leeds Institute for Molecular Medicine, Leeds, United Kingdom |
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7Laboratory of Molecular Diagnostic Institute of Pathology, Locarno, Switzerland |
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8Fondazione Italiana per la Ricerca sul Cancro (FIRC) Institute of Molecular Oncology, Milan, Italy |
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| Deutsches Krebsforschungszentrum, Germany |
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| Correspondence: * E-mail: a.bardelli@unito.it Contributed by footnote: Conceived and designed the experiments: SL AB. Performed the experiments: SL. Analyzed the data: SL AB. Contributed reagents/materials/analysis tools: SL LF FB FB SM VC AS MR MK MF AM AB. Wrote the paper: SL AB. Critical comments: FB AM. |
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Activation of the MAPK signaling pathway plays an important role in tumorigenesis. Multiple components of this pathway such as H, N, K-RAS and BRAF are often mutated in human cancer [1].
Most melanocytic neoplasms show oncogenic mutations in components of the MAPKinase cascade, particularly in BRAF and NRAS[2]. A recent study has reported frequent somatic mutations in the heterotrimeric G protein ?-subunit (GNAQ) in a subset of melanocytic neoplasms which do not present alterations in the RAS or BRAF genes [3]. Genetic, biochemical and biological analysis has shown that GNAQ behaves as a bona fide human oncogene. The reported mutations occur exclusively in codon 209 in the ras-like domain and lead to constitutive activation [3]. The glutamine at codon 209 of GNAQ corresponding to residue 61 of RAS and is essential for GTP hydrolysis [3]. It has been previously shown that in other RAS family members, mutations at this site cause loss of GTPase activity with constitutive activation [3].
GNAQ encodes for alpha subunit of q class of heterotrimeric GTP binding protein (Gq) that mediates signals between G-protein-coupled receptors (GPCRs) and stimulates all four isoforms of ? phospholipase C (PLC?) that catalyzes the hydrolysis of phosphatidylinositol biphosphate (PIP2). Nearly 40% of GPCRs rely upon Gq? family members to stimulate inositol lipid signalling. These include more then 50 subtypes of receptor responsive to a range of hormone, neurotransmitters, neuropeptides, chemokines, autocrine and paracrine molecules [4]. The Gq family members, Gq, G11, G14, and G15/16, like all heterotrimeric G proteins, are composed of three subunits, G?, G? and G?, that cycle between inactive and active signalling states in response to guanine nucleotides. Gq? (GNAQ), G11? (GNA11), G14? (GNA14) and G15? (GNA15) each have very different tissue and cell expression patterns. Gq? and G11? mRNA and protein are ubiquitously distributed across tissues [4]. Compared with Gq? human, G11?, G14?, and G15? share 90%, 80%, and 57% amino acid sequence identity, respectively (Table 1). While GNAQ and GNA11 are ubiquitously expressed, other members of the family show a very restricted pattern of expression. For example GNA 15 is confined to tissues rich in cell types of hematopoietic origin and are enriched in cells in the earlier stages of differentiation [5]. GNA 14 has been demonstrated to be expressed mainly in kidney, liver, lung and pancreas [4]. Of note exon 5 of GNA11 contains an equivalent residue to Q209 of GNAQ. We hypothesized that mutations in GNAQ may also be present in tumor types from non melanocytic origin where they could represent alternative route to MAPKinase activation. To assess this hypothesis, we performed a systematic mutational profile of exon 5 of the GNAQ gene in a large panel of human tumors from different tissue types (Table 2). In light of its ubiquitous expression we also performed the analysis of the GNA11 gene (exon 5) in the same tumor set.
DNA of blue naevi, breast, lung, ovarian and thyroid (papillary and follicular isotopes carcinoma) cancer samples was obtained from the Clinical Research Center, Center of Excellence on Aging at the University-Foundation (Chieti, Italy). Samples were collected according to the ethical requirements and regulations of the review board of the Clinical Research Center, University-Foundation (Chieti, Italy).
DNA of melanoma, colorectal cancer and GIST samples was obtained from the Department of Experimental Oncology at the Institute National Tumori (Milan, Italy). Samples were collected according to the ethical requirements and regulations of the review board of the Istituto Nationale dei Tumori (Milan, Italy). DNA of pancreatic adenocarcinoma (PDAC) was obtained from the Department of Pathology, Section of Anatomic Pathology at the University of Verona (Verona, Italy). Samples were collected according to the ethical requirements and regulations of the review board of the University of Verona (Verona, Italy). Additional DNA samples of thyroid carcinomas (medullary histotype), were obtained from the Department of Cellular Biology and Molecular Pathology at the University of Naples (Naples, Italy). Samples were collected according to the ethical requirements and regulations of the review board of the University of Naples (Naples, Italy). DNA of bladder cancer samples was obtained from the Section of Experimental Oncology at the Leeds Institute for Molecular Medicine (Leeds, United Kingdom). Samples were collected according to the ethical requirements and regulations of the review board Institute for Molecular Medicine (Leeds, United Kingdom). Brain cancer samples were obtained from patients undergoing brain tumor surgery in the Academic Medical Center (Amsterdam, The Netherlands). Consent for removal of the tissue and its storage in the tumor bank for research purposes was obtained and documented in the patient's medical chart. Individual consent for this specific project was waivered by the Academic Medical Center (Amsterdam, The Netherlands) ethics committee because the research was performed on ?waste? material, stored in a coded fashion. The entire tumor database is described in Table 2.
Genomic DNA was isolated as previously described [6]. PCR primers were designed using Primer 3 (http://frodo.wi.mit.edu/cgi-bin/primer3/primer3_www.cgi), and synthesized by Invitrogen/Life Technologies, Inc. (Paisley, England). A universal sequencing primer M13 forward, ([gene: 5?-GTAAAACGACGGCCAGT-3?]) was appended to the 5? end used to sequencing (table 3). PCR products size ranged from 180 to 280 bps.
PCRs were performed in 10-uL reaction volumes in 96-well format containing 0.25 mmol/L deoxynucleotide triphosphates, 1 umol/L each of the forward and reverse primers, 6% DMSO, 1?PCR buffer, 1 ng/uL DNA, and 0.05 unit/uL AmpliTaq Gold DNA polymerase (Applied Byosystems, Foster City, CA) A touchdown PCR program was used for PCR amplification (Peltier Thermocycler, PTC-200, MJ Research, Bio-Rad Laboratories, Inc., Italy). PCR products were purified using AMPure (Agencourt Bioscience Corp., Beckman Coulter S.p.A, Milan, Italy). Cycle sequencing was carried out using BigDye Terminator v3.1 Cycle Sequencing kit (Applied Biosystems, Foster City, CA) with an initial denaturation at 97?C for 3 min, followed by 28 cycles of 97?C for 10 s, 50?C for 20 s, and 60?C for 2 min. Sequencing products were purified using CleanSeq (Agencourt Bioscience, Beckman Coulter) and analyzed on a 3730 DNA Analyzer, ABI capillary electrophoresis system (Applied Biosystems). Sequence traces were analyzed using the Mutation Surveyor software package (SoftGenetics, State College, PA). Only amplicons meeting quality criteria were analyzed: tumor samples had Phred quality scores of ?20.
To assess whether these results were statistically significant we performed the Fisher's exact test to determine the tissue specificity for GNAQ mutation in blue naevi tumors as compared to the other tumor types.
We sequenced exon 5 of the GNAQ and GNA11 genes in in a panel of 922 tumors, including glioblastoma, gastrointestinal stromal tumors, acute myeloid leukemia, blue naevi, melanoma, bladder, breast, colorectal, lung, ovarian, pancreas, and thyroid carcinomas (Table 2). The samples included in the analysis have been previously used for mutational profiling of cancer genes and we have shown that common mutations can be identified in this tumors database [6], [7], [8]. A total of 1844 PCR products, spanning 423 kb of tumor genomic DNA, were generated and subjected to direct sequencing. Sequences analysis identified the presence of the Q209L (c.A627T) mutation in GNAQ in 6/13 (46%) of blue naevi tumors (Figure 1 and Table 2), thus confirming previous data [3]. Importantly, no mutations of GNAQ exon 5 were found in any tumor types, other than blue naevi (Table 2). Similarly, we did not detect mutations in exon 5 of GNA11.
To assess whether these results were statistically significant we performed the Fisher's exact test to determine the tissue specificity for GNAQ mutation in blue naevi tumor as compared to the other tumor types (Table 2).
Our data confirm that GNAQ is a pivotal cancer gene in blue naevi while at the same time unveils a striking tissue-specific pattern of the GNAQQ209 mutations in human cancer.
Blue naevi arise from intradermal melanocytic proliferations, which can be congenital or acquired, and present in diverse ways ranging from discrete bluish moles (blue naevi) to large blue?grey patches affecting the conjunctiva and periorbital skin (naevus of Ota), shoulders (naevus of Ito) and the lower back (Mongolian spot) [3]. Uveal melanomas are thought to originate from melanocytes within the choroidal plexus of the eye and are distinct from cutaneous melanoma by characteristic cytogenetic alterations. Of note, a potential connection between intradermal melanocytic neoplasms and uveal melanoma is suggested by the fact that naevus of Ota is a risk factor for uveal melanoma [3]. Oncogenic alterations in the RAS and BRAF genes are known to frequently affect cutaneous melanoma. Until the discovery of the GNAQQ209 mutations there were no oncogenes altered at high frequency in uveal melanomas and blue naevi. The tissue-specificity of GNAQ mutations may be linked to its involvement in endothelin signaling, which is important for development of melanocytes and also is required for the migration of melanoblasts [5]. The canonical downstream signaling pathways of GNAQ are the ?-isoforms of phospholipase C (PLC-?). Gq?, G11?, bind and stimulate PLC-? enzymes to initiate inositol lipid signalling. PLC-? enzymes catalyze the hydrolysis of the phospholipid phosphatidylinositol bisphosphate, (PIP2), to release inositol trisphosphate (IP3) and diacylglycerol (DAG). These second messengers propagate and amplify the G?-mediated signal trough stimulation of protein kinase C (PKC). [3] One hypothesis is that GNAQ regulates cell growth through a RAS dependent or RAS- independent signaling mechanism involving the PKC-dependent ERK pathway. [9]. Functional assays are now required to assess this possibility and to understand in details the oncogenic signaling mechanisms regulated by GNAQ mutant alleles. Targeting either the mutated GNAQQ209 protein or the oncogenic signaling pathway controlled by mutated GNAQ may open up new therapeutic strategies for melanocytic tumors.
Notes
Competing Interests: The authors have declared that no competing interests exist.
Funding: This work was supported by grants from Italian Association for Cancer Research (AIRC), Italian Ministry of Health, Regione Piemonte, Italian Ministry of University and Research, CRT Progetto Alfieri, Fondazione Monte dei Paschi di Siena, Association for International Cancer Research (AICR-UK) , EU FP6 contract n 037297 (MCSC), EU FP7 Marie Curie, contract n 218071 (Cancer-Gene). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
The authors thank Dr F. Di Nicolantonio for critical reading of the manuscript, Dr. S. Leenstra, Dr. T Hulsebos, and Professor Troost for making glioblastoma tumor samples available from the Brain Tumor Bank maintained by the Departments of Neurosurgery, Neuropathology, and Neurogenetics, Academic Medical Center, Amsterdam. Dr Aniello Cerrato and Dr Massimo Santoro for providing the DNA samples of thyroid carcinomas (medullary histotype).
References
| 1. | Dunn KatherineL,Espino PaulaS,Drobic Bojan,He Shihua,Davie JamesR. Year: 2005The Ras-MAPK signal transduction pathway, cancer and chromatin remodelling.Biochem Cell Biol8311415746962 |
| 2. | Saldanha Gerald,Purnell David,Fletcher Alan,Potter Linda,Gillies Angela,et al. Year: 2004High BRAF mutation frequency does not characterize all melanocytic tumor types.International Journal of Cancer111705710 |
| 3. | Van Raamsdonk CatherineD,Bezrookove Vladimir,Green Gary,Bauer J?rgen,Gaugleret Lona,et al. Year: 2009Frequent somatic mutations of GNAQ in uveal melanoma and blue naevi.Nature45759960219078957 |
| 4. | Hubbard KatherineB,Hepler JohnR. Year: 2006Cell signalling diversity of the Gqa family of heterotrimeric G proteins.Cellular Signalling1813515016182515 |
| 5. | Shin MyungK,Levorse John M,RobertIngram S,ShirleyTilghman M. Year: 1999The temporal requirement for endothelin receptor-B signalling during neural crest development.Nature Developmental Biology162175 |
| 6. | Balakrishnan A,Bleeker FE,Lamba S,Rodolfo M,Daniotti M,et al. Year: 2007Novel somatic and germline mutations in cancer candidate genes in glioblastoma, melanoma, and pancreatic carcinoma.Cancer research6735455017440062 |
| 7. | Bleeker FE,Felicioni L,Buttitta F,Lamba S,Cardone L,et al. Year: 2008AKT1(E17K) in human solid tumours.Oncogene (2008)2756485650 |
| 8. | Bleeker FE,Lamba S,Leenstra S,Troost D,Hulsebos T,et al. Year: 2009IDH1 Mutations at Residue p.R132 (IDH1R132) OccurFrequently in High-Grade Gliomas But Not in Other Solid Tumors.Human Mutation3071119117336 |
| 9. | Radhika V,Dhanasekaran N. Year: 2001Transforming G proteins.OncogeneMar 26; 20(13)16071411313908 |
Figures
Tables
Table 1 Sequence homology (at the protein level) and expression distribution in human tissues among Gq family genes.
| Gq? family member | Gq? | G11? | G14? | G15? |
| Tissue distribution | Ubiquitous | ubiquitous | kidney, liver, lung, pancreas | Hematopoietic cells |
| Sequence homology among different Gq? family members | 100% | 90% | 80% | 57% |
Table 2 Number of samples analyzed for each histological type and the number of mutations identified.
| Tumor type | Histotype | Number of samples analysed | Number of GNAQ mutated samples | P-value Fisher's exact test) |
| Blue neavi | 13 | 6 | ||
| AML | 80 | 0 | 2,25E-06 | |
| Bladder | Total | 39 | 0 | 8,42E-05 |
| transitional cell carcinoma | 35 | 0 | ||
| cell line | 4 | 0 | ||
| Breast | Total | 148 | 0 | 7,79E-08 |
| ductal carcinoma | 61 | 0 | ||
| lobular carcinoma | 50 | 0 | ||
| medullary carcinoma | 18 | 0 | ||
| mucinous carcinoma | 19 | 0 | ||
| Colorectal | adenocarcinoma | 119 | 0 | 2,62E-07 |
| GIST | 22 | 0 | 1,06E-03 | |
| Glioma | Total | 131 | 0 | 1,54E-07 |
| glioblastoma | 117 | 0 | ||
| anaplastic astrocytoma | 2 | 0 | ||
| anaplastic oligodendroglioma | 2 | 0 | ||
| high grade glioma cell lines | 14 | 0 | ||
| Lung | Total | 134 | 0 | 1,36E-07 |
| adenocarcinoma | 110 | 0 | ||
| small cell carcinoma | 17 | 0 | ||
| carcinoid | 7 | 0 | ||
| Melanoma | Total | 24 | 0 | 7,38E-04 |
| primary | 1 | 0 | ||
| nodal metastasis | 14 | 0 | ||
| cutaneous metastasis | 7 | 0 | ||
| visceral metastasis | 2 | 0 | ||
| Ovary | serous adenocarcinoma | 51 | 0 | 2,28E-05 |
| Pancreas | ductal adenocarcinoma | 98 | 0 | 7,57E-07 |
| Thyroid | Total | 63 | 0 | 7,85E-06 |
| medullary carcinoma | 23 | 0 | ||
| papillary carcinoma | 20 | 0 | ||
| follicular carcinoma | 20 | 0 |
nt101(AML: acute myeloid leukemia, GIST: Gastrointestinal Stromal Tumors; In addition, p-values of the Fisher's exact test, used to determine the tissue specificity for GNAQQ209 mutations in blue naevi, are listed.)
Table 3 PCR primers used for the mutational profiling.
| Gene | Exon | Forward Primer Sequence | Reverse Primer Sequence |
| GNAQ | 5 | [gene: 5?- TTAATATGAGTATTGTTAACCTTGCAG -3?] | [gene: 5?- M13_CCATTGCCTGTCTAAAGAACAC -3?] |
| GNA11 | 5 | [gene: 5?- M13_GCCAGGTGGCTGAGTCCT -3?] | [gene: 5?- ACTGCACACAGCCCAAGG-3?] |
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