| Motif Tool Manager: a web-based framework for motif discovery. | |
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MedLine Citation:
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PMID: 19017656 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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MOTIVATION: Motif Tool Manager is a web-based framework for comparing and combining different approaches to discover novel DNA motifs. It comes with a set of five well-known approaches to motif discovery. It provides an easy mechanism for adding new motif finding tools to the framework through a web-interface and a minimal setup of the tools on the server. Users can execute the tools through the web-based framework and compare results from such executions. The framework provides a basic mechanism for identifying the most similar motif candidates found by a majority of themotif finding tools. AVAILABILITY: http://cetus.cs.memphis.edu/motif |
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Authors:
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Vinhthuy Phan; Nicholas A Furlotte |
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Publication Detail:
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Type: Comparative Study; Journal Article Date: 2008-11-18 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: 24 ISSN: 1367-4811 ISO Abbreviation: Bioinformatics Publication Date: 2008 Dec |
Date Detail:
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Created Date: 2008-12-05 Completed Date: 2009-01-13 Revised Date: 2009-11-04 |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: England |
Other Details:
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Languages: eng Pagination: 2930-1 Citation Subset: IM |
Affiliation:
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Department of Computer Science, The Bioinformatics Program and The W. Harry Feinstone Center for Genomics Research, The University of Memphis, Memphis, TN 38152, USA. vphan@memphis.edu |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Algorithms DNA / chemistry Internet Sequence Analysis, DNA / methods* Software* |
| Chemical | |
Reg. No./Substance:
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9007-49-2/DNA |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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