Document Detail

The MicrobesOnline Web site for comparative genomics.
MedLine Citation:
PMID:  15998914     Owner:  NLM     Status:  MEDLINE    
At present, hundreds of microbial genomes have been sequenced, and hundreds more are currently in the pipeline. The Virtual Institute for Microbial Stress and Survival has developed a publicly available suite of Web-based comparative genomic tools ( designed to facilitate multispecies comparison among prokaryotes. Highlights of the MicrobesOnline Web site include operon and regulon predictions, a multispecies genome browser, a multispecies Gene Ontology browser, a comparative KEGG metabolic pathway viewer, a Bioinformatics Workbench for in-depth sequence analysis, and Gene Carts that allow users to save genes of interest for further study while they browse. In addition, we provide an interface for genome annotation, which like all of the tools reported here, is freely available to the scientific community.
Eric J Alm; Katherine H Huang; Morgan N Price; Richard P Koche; Keith Keller; Inna L Dubchak; Adam P Arkin
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.    
Journal Detail:
Title:  Genome research     Volume:  15     ISSN:  1088-9051     ISO Abbreviation:  Genome Res.     Publication Date:  2005 Jul 
Date Detail:
Created Date:  2005-07-06     Completed Date:  2005-09-15     Revised Date:  2009-11-18    
Medline Journal Info:
Nlm Unique ID:  9518021     Medline TA:  Genome Res     Country:  United States    
Other Details:
Languages:  eng     Pagination:  1015-22     Citation Subset:  IM    
Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
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MeSH Terms
Computational Biology
Computer Graphics
Databases, Genetic
Databases, Protein
Genome, Bacterial*
Protein Structure, Tertiary / genetics
User-Computer Interface

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