Document Detail


Localization prediction and structure-based in silico analysis of bacterial proteins: with emphasis on outer membrane proteins.
MedLine Citation:
PMID:  23192545     Owner:  NLM     Status:  In-Data-Review    
Abstract/OtherAbstract:
In this chapter, we first discuss protein localization in bacteria and evaluate some localization prediction tools on an independent dataset. Next, we focus on β-barrel outer membrane proteins (BOMPs), describing and evaluating new tools for BOMP detection and topology prediction. Finally, we apply general protein structure prediction methods on these proteins to show that the structure of most BOMPs in E. coli can be modeled reliably.
Authors:
Kenichiro Imai; Sikander Hayat; Noriyuki Sakiyama; Naoya Fujita; Kentaro Tomii; Arne Elofsson; Paul Horton
Related Documents :
24365405 - Cloning, characterization, and expression of glucose transporter 2 in the freeze-tolera...
23658455 - The resistance protein tm-1 inhibits formation of a tomato mosaic virus replication pro...
24983635 - Oleosome-associated protein of the oleaginous diatom fistulifera solaris contains an en...
4869605 - Assay systems for the study of gene function. 2 assay systems, the syntheses of rna and...
15865055 - Dietary protein restriction during lactation in primiparous sows with different live we...
20504295 - Spartin activates atrophin-1-interacting protein 4 (aip4) e3 ubiquitin ligase and promo...
Publication Detail:
Type:  Journal Article    
Journal Detail:
Title:  Methods in molecular biology (Clifton, N.J.)     Volume:  939     ISSN:  1940-6029     ISO Abbreviation:  Methods Mol. Biol.     Publication Date:  2013  
Date Detail:
Created Date:  2012-11-29     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  9214969     Medline TA:  Methods Mol Biol     Country:  United States    
Other Details:
Languages:  eng     Pagination:  115-40     Citation Subset:  IM    
Affiliation:
AIST, Computational Biology Research Center, Tokyo, Japan.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  Chemogenomic approaches to infer drug-target interaction networks.
Next Document:  Analysis strategy of protein-protein interaction networks.