Document Detail


Literature Mapping with PubAtlas - extending PubMed with a 'BLASTing interface'.
MedLine Citation:
PMID:  21347177     Owner:  NLM     Status:  PubMed-not-MEDLINE    
Abstract/OtherAbstract:
PubAtlas (www.pubatlas.org) is a web service and standalone program providing literature maps for the biomedical research literature. It accepts user-defined sets of terms (PubMed queries) as input, and permits 'BLASTing' of one set against another: for all terms x and y in these sets, deriving the results of the pairwise intersections x AND y. This all vs. all capability extends PubMed with a literature analysis interface. Correspondingly, the basic form of literature map that PubAtlas provides for exploring associations among sets of terms is an interactive tabular display, in heatmap/microarray format.PubAtlas supports development of specialized lexica -- hierarchies of controlled terminology that can represent sets of related concepts or a 'user-defined query language'. PubAtlas also provides historical perspectives on the literature, with temporal query features that highlight historical patterns. Generally, it is a framework for extending the PubMed interface, and an extensible platform for producing interactive literature maps.
Authors:
D S Parker; W W Chu; F W Sabb; A W Toga; R M Bilder
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Publication Detail:
Type:  Journal Article     Date:  2009-03-01
Journal Detail:
Title:  Summit on translational bioinformatics     Volume:  2009     ISSN:  2153-6430     ISO Abbreviation:  Summit on Translat Bioinforma     Publication Date:  2009  
Date Detail:
Created Date:  2011-02-24     Completed Date:  2011-07-14     Revised Date:  2011-07-25    
Medline Journal Info:
Nlm Unique ID:  101528043     Medline TA:  Summit on Translat Bioinforma     Country:  United States    
Other Details:
Languages:  eng     Pagination:  90-4     Citation Subset:  -    
Affiliation:
Computer Science Dept, UCLA;
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