| Literature Mapping with PubAtlas - extending PubMed with a 'BLASTing interface'. | |
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MedLine Citation:
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PMID: 21347177 Owner: NLM Status: PubMed-not-MEDLINE |
Abstract/OtherAbstract:
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PubAtlas (www.pubatlas.org) is a web service and standalone program providing literature maps for the biomedical research literature. It accepts user-defined sets of terms (PubMed queries) as input, and permits 'BLASTing' of one set against another: for all terms x and y in these sets, deriving the results of the pairwise intersections x AND y. This all vs. all capability extends PubMed with a literature analysis interface. Correspondingly, the basic form of literature map that PubAtlas provides for exploring associations among sets of terms is an interactive tabular display, in heatmap/microarray format.PubAtlas supports development of specialized lexica -- hierarchies of controlled terminology that can represent sets of related concepts or a 'user-defined query language'. PubAtlas also provides historical perspectives on the literature, with temporal query features that highlight historical patterns. Generally, it is a framework for extending the PubMed interface, and an extensible platform for producing interactive literature maps. |
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Authors:
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D S Parker; W W Chu; F W Sabb; A W Toga; R M Bilder |
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Publication Detail:
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Type: Journal Article Date: 2009-03-01 |
Journal Detail:
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Title: Summit on translational bioinformatics Volume: 2009 ISSN: 2153-6430 ISO Abbreviation: Summit on Translat Bioinforma Publication Date: 2009 |
Date Detail:
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Created Date: 2011-02-24 Completed Date: 2011-07-14 Revised Date: 2011-07-25 |
Medline Journal Info:
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Nlm Unique ID: 101528043 Medline TA: Summit on Translat Bioinforma Country: United States |
Other Details:
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Languages: eng Pagination: 90-4 Citation Subset: - |
Affiliation:
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Computer Science Dept, UCLA; |
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