Document Detail


Improving the analysis of NMR spectra tracking pH-induced conformational changes: removing artefacts of the electric field on the NMR chemical shift.
MedLine Citation:
PMID:  19894279     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
pH-induced chemical shift perturbations (CSPs) can be used to study pH-dependent conformational transitions in proteins. Recently, an elegant principal component analysis (PCA) algorithm was developed and used to study the pH-dependent structural transitions in bovine beta-lactoglobulin (betaLG) by analyzing its NMR pH-titration spectra. Here, we augment this analysis method by filtering out changes in the NMR chemical shift that stem from effects that are electrostatic in nature. Specifically, we examine how many CSPs can be explained by purely electrostatic effects arising from titrational events in betaLG. The results show that around 20% of the amide nuclei CSPs in betaLG originate exclusively from "through-space" electric field effects. A PCA of NMR data where electric field artefacts have been removed gives a different picture of the pH-dependent structural transitions in betaLG. The method implemented here is well suited to be applied on a whole range of proteins, which experience at least one pH-dependent conformational change. Proteins 2010. (c) 2009 Wiley-Liss, Inc.
Authors:
Predrag Kuki?; Damien Farrell; Chresten R S?ndergaard; Una Bjarnadottir; John Bradley; Gianluca Pollastri; Jens Erik Nielsen
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't    
Journal Detail:
Title:  Proteins     Volume:  78     ISSN:  1097-0134     ISO Abbreviation:  Proteins     Publication Date:  2010 Mar 
Date Detail:
Created Date:  2010-01-26     Completed Date:  2010-03-12     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  8700181     Medline TA:  Proteins     Country:  United States    
Other Details:
Languages:  eng     Pagination:  971-84     Citation Subset:  IM    
Affiliation:
School of Biomolecular and Biomedical Science, Centre for Synthesis and Chemical Biology, UCD Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
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MeSH Terms
Descriptor/Qualifier:
Algorithms
Animals
Cattle
Hydrogen-Ion Concentration
Lactoglobulins / chemistry*
Magnetic Resonance Spectroscopy / methods*
Molecular Dynamics Simulation
Principal Component Analysis
Protein Conformation
Chemical
Reg. No./Substance:
0/Lactoglobulins

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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