| High concordance between the position-specific scoring matrix and geno2pheno algorithms for genotypic interpretation of HIV-1 tropism: V3 length as the major cause of disagreement. | |
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MedLine Citation:
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PMID: 21734029 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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The agreement between the position-specific scoring matrix (PSSM) and geno2pheno as tools for genotypic interpretation of HIV-1 tropism using 800 clinical specimens was assessed. There was an overall concordance of 88%. Disagreement was found mostly in specimens with short V3 lengths (<35 amino acids). Thus, consideration of V3 lengths should improve the predictability of HIV-1 tropism using genotypic algorithms. |
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Authors:
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Eduardo Seclén; Vicente Soriano; María M González; Sagrario Gómez; Alexander Thielen; Eva Poveda |
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Publication Detail:
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Type: Evaluation Studies; Journal Article; Research Support, Non-U.S. Gov't Date: 2011-07-06 |
Journal Detail:
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Title: Journal of clinical microbiology Volume: 49 ISSN: 1098-660X ISO Abbreviation: J. Clin. Microbiol. Publication Date: 2011 Sep |
Date Detail:
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Created Date: 2011-08-31 Completed Date: 2011-12-16 Revised Date: 2012-03-01 |
Medline Journal Info:
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Nlm Unique ID: 7505564 Medline TA: J Clin Microbiol Country: United States |
Other Details:
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Languages: eng Pagination: 3380-2 Citation Subset: IM |
Affiliation:
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Department of Infectious Diseases, Hospital Carlos III, Madrid, Spain. |
| Data Bank Information | |
Bank Name/Acc. No.:
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Export Citation:
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APA/MLA Format Download EndNote Download BibTex |
| MeSH Terms | |
Descriptor/Qualifier:
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Algorithms Genotype HIV Infections / virology HIV-1 / genetics*, pathogenicity* Humans Molecular Sequence Data Position-Specific Scoring Matrices Sequence Analysis, DNA Viral Tropism* Virology / methods* env Gene Products, Human Immunodeficiency Virus / classification*, genetics* |
| Chemical | |
Reg. No./Substance:
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0/env Gene Products, Human Immunodeficiency Virus |
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