Document Detail


Hepatic ontogeny and tissue distribution of mRNAs of epigenetic modifiers in mice using RNA-sequencing.
MedLine Citation:
PMID:  22772165     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Developmental regulation of gene expression is controlled by distinct epigenetic signatures catalyzed by various epigenetic modifiers. Little is known about the ontogeny and tissue distribution of these epigenetic modifiers. In the present study, we used a novel approach of RNA-sequencing to elucidate hepatic ontogeny and tissue distribution of mRNA expression of 142 epigenetic modifiers, including enzymes involved in DNA methylation/demethylation, histone acetylation/deacetylation, histone methylation/demethylation, histone phosphorylation and chromosome remodeling factors in male C57BL/6 mice. Livers from male C57BL/6 mice were collected at 12 ages from prenatal to adulthood. Many of these epigenetic modifiers were expressed at much higher levels in perinatal livers than adult livers, such as Dnmt1, Dnmt3a, Dnmt3b, Apobec3, Kat1, Ncoa4, Setd8, Ash2l, Dot1l, Cbx1, Cbx3, Cbx5, Cbx6, Ezh2, Suz12, Eed, Suv39h1, Suv420h2, Dek, Hdac1, Hdac2, Hdac7, Kdm2b, Kdm5c, Kdm7, Prmt1-5, Prmt7, Smarca4, Smarcb1, Chd4 and Ino80e. In contrast, hepatic mRNA expression of a few epigenetic modifiers increased during postnatal liver development, such as Smarca2, Kdm1b, Cbx7 and Chd3. In adult mice (60 d of age), most epigenetic modifiers were expressed at moderately (1-3-fold) higher levels in kidney and/or small intestine than liver. In conclusion, this study, for the first time, unveils developmental changes in mRNA abundance of all major known epigenetic modifiers in mouse liver. These data suggest that ontogenic changes in mRNA expression of epigenetic modifiers may play important roles in determining the addition and/or removal of corresponding epigenetic signatures during liver development.
Authors:
Hong Lu; Julia Yue Cui; Sumedha Gunewardena; Byunggil Yoo; Xiao-bo Zhong; Curtis D Klaassen
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Extramural     Date:  2012-07-09
Journal Detail:
Title:  Epigenetics : official journal of the DNA Methylation Society     Volume:  7     ISSN:  1559-2308     ISO Abbreviation:  Epigenetics     Publication Date:  2012 Aug 
Date Detail:
Created Date:  2012-08-28     Completed Date:  2013-01-14     Revised Date:  2014-04-08    
Medline Journal Info:
Nlm Unique ID:  101265293     Medline TA:  Epigenetics     Country:  United States    
Other Details:
Languages:  eng     Pagination:  914-29     Citation Subset:  IM    
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MeSH Terms
Descriptor/Qualifier:
Animals
Chromatin Assembly and Disassembly / genetics
DNA (Cytosine-5-)-Methyltransferase / genetics,  metabolism
DNA Methylation / genetics
Epigenesis, Genetic*
Gene Expression Profiling
Genes, Modifier
Histones / genetics,  metabolism
Intestines / metabolism
Kidney / metabolism
Liver / growth & development,  metabolism*
Male
Mice
Mice, Inbred C57BL
Organ Specificity
Protein Processing, Post-Translational
RNA, Messenger / metabolism*
Sequence Analysis, RNA
Tissue Distribution
Grant Support
ID/Acronym/Agency:
ES019487/ES/NIEHS NIH HHS; RR021940/RR/NCRR NIH HHS
Chemical
Reg. No./Substance:
0/Histones; 0/RNA, Messenger; EC 2.1.1.37/DNA (Cytosine-5-)-Methyltransferase
Comments/Corrections

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