Document Detail

Global identification and comparative analysis of SOCS genes in fish: insights into the molecular evolution of SOCS family.
MedLine Citation:
PMID:  18029016     Owner:  NLM     Status:  MEDLINE    
The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organisms. However, the family members in early vertebrate species and their evolutionary history and relationships remain largely unknown. In present study, totally 120 SOCS genes from various species were globally investigated, among of which 66 new SOCS genes were identified, including 55 SOCS genes from five fish species, Tetraodon nigroviridis, Danio rerio, Takifugu rubripes, Gasterosteus aculeatus and Oryzias latipes, 11 from amphibian, avian and insects. The results showed that fish possess at least 12 SOCS family members, including eight known mammalian SOCS members (CISH, SOCS-1-7) and four novel members (SOCS-3b, -5b, -8 and -9). Fish SOCS proteins share strikingly high levels of sequence similarity in SH2 domain and SOCS box region with higher vertebrate counterparts, and the organization of SOCS genes are conserved during vertebrate SOCS evolution. The expression levels of the most fish SOCS genes, such as CISH, SOCS-1-5 and SOCS-9, were increased after LPS challenge, indicating that they are involved in inflammatory response. Phylogenetic analyses clearly showed that the SOCS gene family could be divided into two subfamilies (named as types I and II subfamily). Type I subfamily consists of vertebrate SOCS-4-7, SOCS-5b, SOCS-9 and all invertebrate SOCS genes. Type II subfamily contains vertebrate CISH, SOCS-1-3, SOCS-3b and SOCS-8. Only SOCS-5, -6 and -7 like genes existed in invertebrate, which may be generated by twice-ancient duplication events. Type II subfamily members were likely derived from a certain type I member by gene duplication in the vertebrate lineages after the divergence of vertebrate from invertebrate. In type II subfamily, SOCS genes formed two separate monophyletic groups, respectively, which suggests that another duplication event occurred in the early stage of evolution. The fact that SOCS-9, SOCS-5b, SOCS-3b and SOCS-8 present only in teleostei suggests that even more duplication events occurred before teleostei and higher vertebrates diverged. Results suggest that the SOCS multi-gene family derived from the expansion of an ancestral SOCS gene through at least cubical duplication events during evolution process.
Hong-Jian Jin; Jian-Zhong Shao; Li-Xin Xiang; Hao Wang; Li-Li Sun
Related Documents :
2664426 - The ribonucleoside diphosphate reductase gene (nrda) of escherichia coli carries a repe...
11054546 - Common phylogeny of catalase-peroxidases and ascorbate peroxidases.
18753776 - Insights from xenopus genomes.
16008556 - Retention of the duplicated cellular retinoic acid-binding protein 1 genes (crabp1a and...
24435866 - Draft genome sequence of the model naphthalene-utilizing organism pseudomonas putida ou...
8900106 - Comparison of fungal ornithine decarboxylases.
Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't     Date:  2007-10-29
Journal Detail:
Title:  Molecular immunology     Volume:  45     ISSN:  0161-5890     ISO Abbreviation:  Mol. Immunol.     Publication Date:  2008 Mar 
Date Detail:
Created Date:  2007-12-31     Completed Date:  2008-05-22     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  7905289     Medline TA:  Mol Immunol     Country:  England    
Other Details:
Languages:  eng     Pagination:  1258-68     Citation Subset:  IM    
College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Evolution, Molecular*
Fish Proteins / genetics*
Gene Duplication
Gene Expression Regulation / genetics
Inflammation / genetics
Lipopolysaccharides / pharmacology
Multigene Family
Suppressor of Cytokine Signaling Proteins / genetics*
Reg. No./Substance:
0/Fish Proteins; 0/Lipopolysaccharides; 0/Suppressor of Cytokine Signaling Proteins

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine

Previous Document:  Vitellogenin as a biomarker of exposure to estrogenic compounds in aquatic invertebrates: a review.
Next Document:  Vicilin allergens of peanut and tree nuts (walnut, hazelnut and cashew nut) share structurally relat...