Document Detail


Genome-wide ribosome profiling reveals complex translational regulation in response to oxidative stress.
MedLine Citation:
PMID:  23045643     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Information on unique and coordinated regulation of transcription and translation in response to stress is central to the understanding of cellular homeostasis. Here we used ribosome profiling coupled with next-generation sequencing to examine the interplay between transcription and translation under conditions of hydrogen peroxide treatment in Saccharomyces cerevisiae. Hydrogen peroxide treatment led to a massive and rapid increase in ribosome occupancy of short upstream ORFs, including those with non-AUG translational starts, and of the N-terminal regions of ORFs that preceded the transcriptional response. In addition, this treatment induced the synthesis of N-terminally extended proteins and elevated stop codon read-through and frameshift events. It also increased ribosome occupancy at the beginning of ORFs and potentially the duration of the elongation step. We identified proteins whose synthesis was regulated rapidly by hydrogen peroxide posttranscriptionally; however, for the majority of genes increased protein synthesis followed transcriptional regulation. These data define the landscape of genome-wide regulation of translation in response to hydrogen peroxide and suggest that potentiation (coregulation of the transcript level and translation) is a feature of oxidative stress.
Authors:
Maxim V Gerashchenko; Alexei V Lobanov; Vadim N Gladyshev
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Extramural     Date:  2012-10-08
Journal Detail:
Title:  Proceedings of the National Academy of Sciences of the United States of America     Volume:  109     ISSN:  1091-6490     ISO Abbreviation:  Proc. Natl. Acad. Sci. U.S.A.     Publication Date:  2012 Oct 
Date Detail:
Created Date:  2012-10-24     Completed Date:  2013-01-07     Revised Date:  2013-10-22    
Medline Journal Info:
Nlm Unique ID:  7505876     Medline TA:  Proc Natl Acad Sci U S A     Country:  United States    
Other Details:
Languages:  eng     Pagination:  17394-9     Citation Subset:  IM    
Affiliation:
Division of Genetics, Department of Medicine, Brigham and Women's Hospital and Harvard Medical School, Boston, MA 02115, USA.
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MeSH Terms
Descriptor/Qualifier:
Codon, Initiator
Codon, Terminator
Genome, Fungal*
Hydrogen Peroxide / pharmacology
Open Reading Frames
Oxidative Stress*
Protein Biosynthesis*
Ribosomes*
Saccharomyces cerevisiae / drug effects
Transcription, Genetic
Grant Support
ID/Acronym/Agency:
GM065204/GM/NIGMS NIH HHS; R37 GM065204/GM/NIGMS NIH HHS
Chemical
Reg. No./Substance:
0/Codon, Initiator; 0/Codon, Terminator; 7722-84-1/Hydrogen Peroxide
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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