Document Detail


Genome-wide gene expression analysis in cancer cells reveals 3D growth to affect ECM and processes associated with cell adhesion but not DNA repair.
MedLine Citation:
PMID:  22509286     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Cell morphology determines cell behavior, signal transduction, protein-protein interaction, and responsiveness to external stimuli. In cancer, these functions profoundly contribute to resistance mechanisms to radio- and chemotherapy. With regard to this aspect, this study compared the genome wide gene expression in exponentially growing cell lines from different tumor entities, lung carcinoma and squamous cell carcinoma, under more physiological three-dimensional (3D) versus monolayer cell culture conditions. Whole genome cDNA microarray analysis was accomplished using the Affymetrix HG U133 Plus 2.0 gene chip. Significance analysis of microarray (SAM) and t-test analysis revealed significant changes in gene expression profiles of 3D relative to 2D cell culture conditions. These changes affected the extracellular matrix and were mainly associated with biological processes like tissue development, cell adhesion, immune system and defense response in contrast to terms related to DNA repair, which lacked significant alterations. Selected genes were verified by semi-quantitative RT-PCR and Western blotting. Additionally, we show that 3D growth mediates a significant increase in tumor cell radio- and chemoresistance relative to 2D. Our findings show significant gene expression differences between 3D and 2D cell culture systems and indicate that cellular responsiveness to external stress such as ionizing radiation and chemotherapeutics is essentially influenced by differential expression of genes involved in the regulation of integrin signaling, cell shape and cell-cell contact.
Authors:
Oliver Zschenker; Thomas Streichert; Stephanie Hehlgans; Nils Cordes
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't     Date:  2012-04-11
Journal Detail:
Title:  PloS one     Volume:  7     ISSN:  1932-6203     ISO Abbreviation:  PLoS ONE     Publication Date:  2012  
Date Detail:
Created Date:  2012-04-17     Completed Date:  2012-08-20     Revised Date:  2013-06-26    
Medline Journal Info:
Nlm Unique ID:  101285081     Medline TA:  PLoS One     Country:  United States    
Other Details:
Languages:  eng     Pagination:  e34279     Citation Subset:  IM    
Affiliation:
OncoRay-National Center for Radiation Research in Oncology, Medical Faculty Carl Gustav Carus, Dresden University of Technology, Dresden, Germany.
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MeSH Terms
Descriptor/Qualifier:
Cell Adhesion / drug effects,  genetics,  radiation effects
Cell Culture Techniques
Cell Line, Tumor
Cell Proliferation / drug effects,  radiation effects
Cell Survival / drug effects,  genetics,  radiation effects
DNA Repair / drug effects,  genetics,  radiation effects
Extracellular Matrix / drug effects,  genetics*,  radiation effects
Gene Expression Profiling / methods*
Genomics / methods*
Humans
Oligonucleotide Array Sequence Analysis
Reproducibility of Results
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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