Document Detail


Genome of a Bombyx mori nucleopolyhedrovirus strain isolated from India.
MedLine Citation:
PMID:  23043173     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Bombyx mori nucleopolyhedrovirus (BmNPV), a member of the Baculoviridae, is a major pathogen of silkworm and has also been recently developed as an expression vector for heterologous gene expression in the silkworm larvae and pupae. To better understand the diversity of this important baculovirus, we sequenced the complete genome of the BmNPV strain isolated from India, where its host is available throughout the year due to its tropical climate. The genome of the Indian strain consists of 127,879 nucleotides, with a G+C content of 40.36%. There are 138 open reading frames (ORFs) encoding the predicted proteins of more than 50 amino acids. Genomic comparison of the Indian strain with 3 other reported BmNPV strains showed that the baculovirus repeat ORFs (bro) and homologous repeat regions (hr's) are highly variable. These results suggest that the BmNPV strain heterogeneity is mainly caused by single-nucleotide polymorphisms (SNPs) and changes in the hr's and bro genes.
Authors:
Hai-Wei Fan; Xue-Chao Zhang; Yi-Peng Xu; Xiao-Wen Cheng; Chuan-Xi Zhang
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Publication Detail:
Type:  Journal Article; Research Support, Non-U.S. Gov't    
Journal Detail:
Title:  Journal of virology     Volume:  86     ISSN:  1098-5514     ISO Abbreviation:  J. Virol.     Publication Date:  2012 Nov 
Date Detail:
Created Date:  2012-10-08     Completed Date:  2013-01-07     Revised Date:  2013-07-11    
Medline Journal Info:
Nlm Unique ID:  0113724     Medline TA:  J Virol     Country:  United States    
Other Details:
Languages:  eng     Pagination:  11941     Citation Subset:  IM    
Affiliation:
Agriculture Key Laboratory of Agricultural Entomology, Institute of Insect Science, Zhejiang University, Hangzhou, China.
Data Bank Information
Bank Name/Acc. No.:
GENBANK/JQ991010
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MeSH Terms
Descriptor/Qualifier:
Animals
Base Composition
Bombyx / virology
DNA, Viral / chemistry*,  genetics*
Genome, Viral*
India
Molecular Sequence Data
Nucleopolyhedrovirus / genetics*,  isolation & purification
Open Reading Frames
Polymorphism, Single Nucleotide
Sequence Analysis, DNA
Chemical
Reg. No./Substance:
0/DNA, Viral
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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