Document Detail


Further support of genetic conservation in Indian isolates of Rice tungro bacilliform virus by sequence analysis of an isolate from North-Western India.
MedLine Citation:
PMID:  23197138     Owner:  NLM     Status:  Publisher    
Abstract/OtherAbstract:
The genomic sequence of an isolate of Rice tungro bacilliform virus (RTBV), collected from the state of Punjab (Pb), a non-endemic tungro region from North-Western India was determined. In silico comparison of the 7931-bp sequence with isolates from Southeast Asia and the three previously characterized Indian isolates, revealed not only similar genome size to other Indian isolates but also high degree of homology both at nucleotide (>93 %) and amino acid (>96 %) levels among them. On the other hand, like the other Indian isolates, RTBV-Pb showed much lower nucleotide (<87 %) and amino acid (<90 % in most of the open reading frames) identities with the Southeast Asian isolates owing to several nucleotide substitutions and indels. In-depth annotation comparisons reinforce the hypothesis that Indian isolates of RTBV have diverged sufficiently from the Southeast Asian ones to form a separate group.
Authors:
Saloni Mathur; Indranil Dasgupta
Related Documents :
22966748 - Re-sequencing of ankyrin 3 exon 48 and case-control association analysis of rare varian...
16178368 - Isolation and characterization of a catalase-peroxidase gene from the pathogenic fungus...
20150238 - Paradoxical conservation of a set of three cellulose-targeting genes in mycobacterium t...
19656368 - Comparative genomic analyses of streptococcus mutans provide insights into chromosomal ...
25051498 - Identification of proteins associated with an ifnγ-responsive promoter by a retroviral...
15247098 - Dagchainer: a tool for mining segmental genome duplications and synteny.
Publication Detail:
Type:  JOURNAL ARTICLE     Date:  2012-11-30
Journal Detail:
Title:  Virus genes     Volume:  -     ISSN:  1572-994X     ISO Abbreviation:  Virus Genes     Publication Date:  2012 Nov 
Date Detail:
Created Date:  2012-11-30     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  8803967     Medline TA:  Virus Genes     Country:  -    
Other Details:
Languages:  ENG     Pagination:  -     Citation Subset:  -    
Affiliation:
Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  Lyssavirus surveillance in bats of southern China's Guangxi Province.
Next Document:  Morphology of the foramen magnum in young Eastern European adults.