Document Detail


Ecology of marine Bacteroidetes: a comparative genomics approach.
MedLine Citation:
PMID:  23303374     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
Bacteroidetes are commonly assumed to be specialized in degrading high molecular weight (HMW) compounds and to have a preference for growth attached to particles, surfaces or algal cells. The first sequenced genomes of marine Bacteroidetes seemed to confirm this assumption. Many more genomes have been sequenced recently. Here, a comparative analysis of marine Bacteroidetes genomes revealed a life strategy different from those of other important phyla of marine bacterioplankton such as Cyanobacteria and Proteobacteria. Bacteroidetes have many adaptations to grow attached to particles, have the capacity to degrade polymers, including a large number of peptidases, glycoside hydrolases (GHs), glycosyl transferases, adhesion proteins, as well as the genes for gliding motility. Several of the polymer degradation genes are located in close association with genes for TonB-dependent receptors and transducers, suggesting an integrated regulation of adhesion and degradation of polymers. This confirmed the role of this abundant group of marine bacteria as degraders of particulate matter. Marine Bacteroidetes had a significantly larger number of proteases than GHs, while non-marine Bacteroidetes had equal numbers of both. Proteorhodopsin containing Bacteroidetes shared two characteristics: small genome size and a higher number of genes involved in CO2 fixation per Mb. The latter may be important in order to survive when floating freely in the illuminated, but nutrient-poor, ocean surface.
Authors:
Beatriz Fernández-Gómez; Michael Richter; Margarete Schüler; Jarone Pinhassi; Silvia G Acinas; José M González; Carlos Pedrós-Alió
Related Documents :
7592594 - Molecular cloning and functional expression of neurospora deoxyhypusine synthase cdna a...
9422604 - Molecular cloning and physical mapping of the daptomycin gene cluster from streptomyces...
19370064 - Sequencing and modular analysis of the hybrid non-ribosomal peptide synthase - polyketi...
18612244 - Identification of a cryptic type iii polyketide synthase (1,3,6,8-tetrahydroxynaphthale...
10489344 - Transient bicistronic vrna segments for indirect selection of recombinant influenza vir...
1697064 - Organization and expression of the 16s, 23s and 5s ribosomal rna genes from the archaeb...
Publication Detail:
Type:  Comparative Study; Journal Article; Research Support, Non-U.S. Gov't     Date:  2013-01-10
Journal Detail:
Title:  The ISME journal     Volume:  7     ISSN:  1751-7370     ISO Abbreviation:  ISME J     Publication Date:  2013 May 
Date Detail:
Created Date:  2013-04-24     Completed Date:  2013-12-04     Revised Date:  2014-05-07    
Medline Journal Info:
Nlm Unique ID:  101301086     Medline TA:  ISME J     Country:  England    
Other Details:
Languages:  eng     Pagination:  1026-37     Citation Subset:  IM    
Data Bank Information
Bank Name/Acc. No.:
GENBANK/AAMZ00000000;  AANA00000000;  AANC00000000
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:
Bacterial Adhesion
Bacteroidetes / classification*,  enzymology,  genetics,  physiology*
Ecology
Genome, Bacterial
Genomics / methods*
Glycosyltransferases / genetics,  metabolism
Locomotion
Molecular Sequence Data
Seawater / microbiology*
Chemical
Reg. No./Substance:
EC 2.4.-/Glycosyltransferases
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  A novel approach, based on BLSOMs (Batch Learning Self-Organizing Maps), to the microbiome analysis ...
Next Document:  The subgingival microbiome in health and periodontitis and its relationship with community biomass a...