Document Detail


EXP-PAC: Providing comparative analysis and storage of next generation gene expression data.
MedLine Citation:
PMID:  22609187     Owner:  NLM     Status:  Publisher    
Abstract/OtherAbstract:
Microarrays and more recently RNA sequencing has led to an increase in available gene expression data. How to manage and store this data is becoming a key issue. In response we have developed EXP-PAC, a web based software package for storage, management and analysis of gene expression and sequence data. Unique to this package is SQL based querying of gene expression datasets, distributed normalization of raw gene expression data and analysis of gene expression data across experiments and species. This package has been populated with lactation data in the international milk genomic consortium web portal (http://milkgenomics.org/). Source code is also available which can be hosted on a Windows, Linux or Mac APACHE server connected to a private or public network (http://mamsap.it.deakin.edu.au/pcc/Release/EXP_PAC.html).
Authors:
Philip Church; Andrzej Goscinski; Christophe Lefèvre
Related Documents :
22809337 - Identification of shortened 3' untranslated regions from expression arrays.
9325307 - Restriction of copper export in saccharomyces cerevisiae to a late golgi or post-golgi ...
19019077 - Light-induced gene expression of fructose 1,6-bisphosphate aldolase during heterotrophi...
22899817 - Convergent and divergent evolution of genomic imprinting in the marsupial monodelphis d...
2120577 - Heavy and light chain contributions to antigen binding in an anti-digoxin chain recombi...
11466207 - Use of cryopreserved pronuclear embryos for the production of transgenic mice.
Publication Detail:
Type:  JOURNAL ARTICLE     Date:  2012-5-15
Journal Detail:
Title:  Genomics     Volume:  -     ISSN:  1089-8646     ISO Abbreviation:  -     Publication Date:  2012 May 
Date Detail:
Created Date:  2012-5-21     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  8800135     Medline TA:  Genomics     Country:  -    
Other Details:
Languages:  ENG     Pagination:  -     Citation Subset:  -    
Copyright Information:
Copyright © 2012. Published by Elsevier Inc.
Affiliation:
School of Information Technology, Faculty of Science and Technology, Deakin University, Geelong VIC 3127, Australia.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  Depletion of protein kinase N3 (PKN3) impairs actin and adherens junctions dynamics and attenuates e...
Next Document:  Formation and characterization of natural polysaccharide hollow nanocapsules via template layer-by-l...