Document Detail


Development of novel visual-plus quantitative analysis systems for studying DNA double-strand break repairs in zebrafish.
MedLine Citation:
PMID:  23021549     Owner:  NLM     Status:  In-Data-Review    
Abstract/OtherAbstract:
The use of reporter systems to analyze DNA double-strand break (DSB) repairs, based on the enhanced green fluorescent protein (EGFP) and meganuclease such as I-Sce I, is usually carried out with cell lines. In this study, we developed three visual-plus quantitative assay systems for homologous recombination (HR), non-homologous end joining (NHEJ) and single-strand annealing (SSA) DSB repair pathways at the organismal level in zebrafish embryos. To initiate DNA DSB repair, we used two I-Sce I recognition sites in opposite orientation rather than the usual single site. The NHEJ, HR and SSA repair pathways were separately triggered by the injection of three corresponding I-Sce I-cut constructions, and the repair of DNA lesion caused by I-Sce I could be tracked by EGFP expression in the embryos. Apart from monitoring the intensity of green fluorescence, the repair frequencies could also be precisely measured by quantitative real-time polymerase chain reaction (qPCR). Analysis of DNA sequences at the DSB sites showed that NHEJ was predominant among these three repair pathways in zebrafish embryos. Furthermore, while HR and SSA reporter systems could be effectively decreased by the knockdown of rad51 and rad52, respectively, NHEJ could only be impaired by the knockdown of ligaseIV (lig4) when the NHEJ construct was cut by I-Sce I in vivo. More interestingly, blocking NHEJ with lig4-MO increased the frequency of HR, but decreased the frequency of SSA. Our studies demonstrate that the major mechanisms used to repair DNA DSBs are conserved from zebrafish to mammal, and zebrafish provides an excellent model for studying and manipulating DNA DSB repair at the organismal level.
Authors:
Jingang Liu; Lu Gong; Changqing Chang; Cong Liu; Jinrong Peng; Jun Chen
Related Documents :
24125299 - Critical bending torque of dna is a materials parameter independent of local base seque...
6850079 - Early alterations in rat liver chromatin structure after a single dose of diethylnitros...
25137139 - The crispr/cas9 system facilitates clearance of the intrahepatic hbv templates in vivo.
16759979 - Biomarkers signal contaminant effects on the organs of english sole (parophrys vetulus)...
9008729 - Lack of effect of piperonyl butoxide on unscheduled dna synthesis in precision-cut huma...
23207919 - Restricted leucine zipper dimerization and specificity of dna recognition of the melano...
22015179 - Global dna methylation and risk of subclinical atherosclerosis in young adults: the pat...
11790149 - Cd and melting curves structural studies of the tandem dna complex formed with oligonuc...
12927419 - Polymerase slippage in relation to the uniformity of tetrameric repeat stretches.
Publication Detail:
Type:  Journal Article     Date:  2012-08-23
Journal Detail:
Title:  Journal of genetics and genomics = Yi chuan xue bao     Volume:  39     ISSN:  1673-8527     ISO Abbreviation:  J Genet Genomics     Publication Date:  2012 Sep 
Date Detail:
Created Date:  2012-10-01     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  101304616     Medline TA:  J Genet Genomics     Country:  China    
Other Details:
Languages:  eng     Pagination:  489-502     Citation Subset:  IM    
Copyright Information:
Copyright © 2012. Published by Elsevier Ltd.
Affiliation:
College of Life Sciences, Zhejiang University, 866 Yu Hang Tang Road, Hangzhou 310058, China.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms
Descriptor/Qualifier:

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


Previous Document:  A surgery protocol for adult zebrafish spinal cord injury.
Next Document:  Effective expression-independent gene trapping and mutagenesis mediated by sleeping beauty transposo...