Document Detail


Design challenges for hemoproteins: the solution structure of apocytochrome b5.
MedLine Citation:
PMID:  8639599     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
In order to characterize the structural and dynamic factors that determine the assembly in b hemoproteins, the solution structure of the 98-residue protein apocytochrome b5 was determined by NMR methods. Over 800 experimental restraints derived from a series of two- and three-dimensional experiments were used. Holocytochrome b5, the protein with iron protoporphyrin-IX liganded to His-39 and His-63, contains in sequence the following elements of secondary structure: beta 1-alpha 1-beta 4-beta 3-alpha 2-alpha 3-beta 5-alpha 4-alpha 5-beta 2-alpha 6 [Mathews, F.S., Czerwinski, E. W., & Argos, P. (1979) The Porphyrins, Vol. 7, pp. 107-147, Academic Press, New York]. The folded holoprotein possesses two hydrophobic cores: an extensive, functional core around the heme (core 1), and a smaller, structural core remote from the heme (core 2). The apoprotein was found to contain a stable four-stranded beta-sheet encompassing beta 1, beta 2, beta 3, and beta 4 and three alpha-helices, corresponding to alpha 1, alpha 2, and alpha 6. Two short alpha-helices (alpha 3 and alpha 5) appear to form partially, and alpha 4 is not detected. These three helices and beta 5 border the heme binding pocket and are disordered in the apoprotein NMR structure. According to backbone 1H-15N NOE results, the most flexible region of the apoprotein, except for the termini, extends from Ala-50 (in beta 5) to Glu-69 (in alpha 5). The polypeptide segment bearing His-63 (located immediately prior to alpha 5) exhibits faster internal motions than that bearing His-39 (at the C-terminal end of alpha 2). The latter imidazole samples a restricted region of space, whereas the former can adopt many orientations with respect to the stable core. It was concluded that heme removal affects the structure and dynamics of most of core 1 whereas it leaves core 2 largely intact. The results provide guidelines for the rational design of b hemoproteins: a modular structure including a packed, stable core and a partially folded binding site is anticipated to present strong kinetic and thermodynamic advantages compared to approaches relying on the complete formation of secondary structure prior to heme binding.
Authors:
C J Falzone; M R Mayer; E L Whiteman; C D Moore; J T Lecomte
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Publication Detail:
Type:  Journal Article; Research Support, U.S. Gov't, P.H.S.    
Journal Detail:
Title:  Biochemistry     Volume:  35     ISSN:  0006-2960     ISO Abbreviation:  Biochemistry     Publication Date:  1996 May 
Date Detail:
Created Date:  1996-07-17     Completed Date:  1996-07-17     Revised Date:  2007-11-14    
Medline Journal Info:
Nlm Unique ID:  0370623     Medline TA:  Biochemistry     Country:  UNITED STATES    
Other Details:
Languages:  eng     Pagination:  6519-26     Citation Subset:  IM    
Affiliation:
Department of Chemistry, Pennsylvania State University, University Park 16802, USA.
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MeSH Terms
Descriptor/Qualifier:
Amino Acid Sequence
Animals
Apoproteins / chemistry*,  isolation & purification,  metabolism
Binding Sites
Cytochrome b Group / chemistry*,  isolation & purification,  metabolism
Cytochromes b
Cytochromes b5 / chemistry
Hemeproteins / chemistry*,  metabolism
Magnetic Resonance Spectroscopy / methods
Models, Molecular
Molecular Sequence Data
Protein Folding
Protein Structure, Secondary*
Protoporphyrins
Rats
Recombinant Proteins / chemistry,  isolation & purification,  metabolism
Grant Support
ID/Acronym/Agency:
DK-43101/DK/NIDDK NIH HHS; GM-54217/GM/NIGMS NIH HHS
Chemical
Reg. No./Substance:
0/Apoproteins; 0/Cytochrome b Group; 0/Hemeproteins; 0/Protoporphyrins; 0/Recombinant Proteins; 553-12-8/protoporphyrin IX; 9035-37-4/Cytochromes b; 9035-39-6/Cytochromes b5

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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