Document Detail

Computer simulation of reactions in beta-cyclodextrin molecular reactors: transition state recognition.
MedLine Citation:
PMID:  20697609     Owner:  NLM     Status:  PubMed-not-MEDLINE    
Cyclodextrins have attracted much interest in recent years because of their potential use as molecular reactors allowing organic reactions in aqueous solution. To better understand their effect on reaction mechanisms, we have carried out a computational study of a prototypical process (neutral ester hydrolysis) in a beta-cyclodextrin (beta-CD). Two models have been used for the reactor. The first and simpler one assumes that the medium can be described by a polarizable dielectric continuum. The second one takes into account the discrete nature of the beta-CD and water molecules thanks to a computational approach that combines the use of Quantum Mechanics, Molecular Mechanics and Molecular Dynamics techniques. We focus on neutral pH processes for which either acceleration or inhibition has experimentally been observed depending on ester derivatives. Our calculations rationalize such observations by showing that the two reaction mechanisms usually invoked for hydrolysis, stepwise (involving two transitions states with formation of a -C(OH)(2)OR tetrahedral intermediate) and concerted, undergo opposite effects in the beta-CD environment. The results highlight the role played by molecular shape recognition. Thus, in spite of a higher polarity exhibited by the three transition states with respect to the reactants, the interactions with the beta-CD cavity may either increase or decrease the activation barrier due to different 3D-arrangements of the chemical structures.
Violeta Yeguas; Ramón López; Alexandrine Lambert; Gérald Monard; Manuel F Ruiz-López
Related Documents :
12590569 - Structural and kinetic analysis of catalysis by a thiamin diphosphate-dependent enzyme,...
14730979 - Role of protein conformational mobility in enzyme catalysis: acylation of alpha-chymotr...
21907579 - Effect of lipophilicity modulation on inhibition of human rhinovirus capsid binders.
22261109 - Assessing the potential toxic effect of one persistent organic pollutant: non-covalent ...
21738319 - Binding mode prediction and inhibitor design of anti-influenza virus diketo acids targe...
8395879 - Catalysis of the hydrolysis of phosphorylated pyridines by alkaline phosphatase has lit...
20518739 - Analogues of trypsin inhibitor sfti-1 with disulfide bridge substituted by various leng...
23569239 - Choreography of importin-α/cas complex assembly and disassembly at nuclear pores.
12750019 - The design of potent, non-peptidic inhibitors of hepatitis c protease.
Publication Detail:
Type:  Journal Article     Date:  2010-08-09
Journal Detail:
Title:  Organic & biomolecular chemistry     Volume:  8     ISSN:  1477-0539     ISO Abbreviation:  Org. Biomol. Chem.     Publication Date:  2010 Oct 
Date Detail:
Created Date:  2010-09-08     Completed Date:  2011-01-13     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  101154995     Medline TA:  Org Biomol Chem     Country:  England    
Other Details:
Languages:  eng     Pagination:  4346-55     Citation Subset:  -    
Departamento de Química Física y Analítica, Universidad de Oviedo, C/Julián Clavería, 8, 33006 Oviedo, Spain.
Export Citation:
APA/MLA Format     Download EndNote     Download BibTex
MeSH Terms

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine

Previous Document:  Studies on highly regio- and stereoselective hydration of 1,2-allenylic sulfoxides.
Next Document:  Luminescent platinum complexes containing phosphorus-linked silole ligands.