| ClaMS: A Classifier for Metagenomic Sequences. | |
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MedLine Citation:
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PMID: 22180827 Owner: NLM Status: In-Data-Review |
Abstract/OtherAbstract:
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ClaMS - "Classifier for Metagenomic Sequences" - is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence composition-based genomic signatures, it is much faster than binning tools that rely on alignments to homologs; ClaMS can bin ~20,000 sequences in 3 minutes on a laptop with a 2.4 GH× Intel Core 2 Duo processor and 2 GB RAM. ClaMS is meant to be a desktop application for biologists and can be run on any machine under any Operating System on which the Java Runtime Environment can be installed. |
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Authors:
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Amrita Pati; Lenwood S Heath; Nikos C Kyrpides; Natalia Ivanova |
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Publication Detail:
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Type: Journal Article Date: 2011-11-28 |
Journal Detail:
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Title: Standards in genomic sciences Volume: 5 ISSN: 1944-3277 ISO Abbreviation: Stand Genomic Sci Publication Date: 2011 Nov |
Date Detail:
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Created Date: 2011-12-19 Completed Date: - Revised Date: - |
Medline Journal Info:
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Nlm Unique ID: 101530505 Medline TA: Stand Genomic Sci Country: United States |
Other Details:
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Languages: eng Pagination: 248-53 Citation Subset: - |
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From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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