| BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks. | |
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MedLine Citation:
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PMID: 18024474 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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BiNoM (Biological Network Manager) is a new bioinformatics software that significantly facilitates the usage and the analysis of biological networks in standard systems biology formats (SBML, SBGN, BioPAX). BiNoM implements a full-featured BioPAX editor and a method of 'interfaces' for accessing BioPAX content. BiNoM is able to work with huge BioPAX files such as whole pathway databases. In addition, BiNoM allows the analysis of networks created with CellDesigner software and their conversion into BioPAX format. BiNoM comes as a library and as a Cytoscape plugin which adds a rich set of operations to Cytoscape such as path and cycle analysis, clustering sub-networks, decomposition of network into modules, clipboard operations and others. AVAILABILITY: Last version of BiNoM distributed under the LGPL licence together with documentation, source code and API are available at http://bioinfo.curie.fr/projects/binom |
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Authors:
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Andrei Zinovyev; Eric Viara; Laurence Calzone; Emmanuel Barillot |
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Publication Detail:
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Type: Journal Article; Research Support, Non-U.S. Gov't Date: 2007-11-16 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: 24 ISSN: 1367-4811 ISO Abbreviation: Bioinformatics Publication Date: 2008 Mar |
Date Detail:
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Created Date: 2008-03-14 Completed Date: 2008-04-07 Revised Date: 2009-11-04 |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: England |
Other Details:
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Languages: eng Pagination: 876-7 Citation Subset: IM |
Affiliation:
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Institut Curie, Service de Bioinformatique, 26 rue d'Ulm, F-75248 Paris Cedex 05, France. andrei.zinovyev@curie.fr |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Computer Simulation Database Management Systems* Databases, Factual Information Storage and Retrieval / methods Models, Biological* Programming Languages* Proteome / metabolism* Signal Transduction / physiology* Software* User-Computer Interface* |
| Chemical | |
Reg. No./Substance:
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0/Proteome |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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