Document Detail


Balancing selection maintains a form of ERAP2 that undergoes nonsense-mediated decay and affects antigen presentation.
MedLine Citation:
PMID:  20976248     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
A remarkable characteristic of the human major histocompatibility complex (MHC) is its extreme genetic diversity, which is maintained by balancing selection. In fact, the MHC complex remains one of the best-known examples of natural selection in humans, with well-established genetic signatures and biological mechanisms for the action of selection. Here, we present genetic and functional evidence that another gene with a fundamental role in MHC class I presentation, endoplasmic reticulum aminopeptidase 2 (ERAP2), has also evolved under balancing selection and contains a variant that affects antigen presentation. Specifically, genetic analyses of six human populations revealed strong and consistent signatures of balancing selection affecting ERAP2. This selection maintains two highly differentiated haplotypes (Haplotype A and Haplotype B), with frequencies 0.44 and 0.56, respectively. We found that ERAP2 expressed from Haplotype B undergoes differential splicing and encodes a truncated protein, leading to nonsense-mediated decay of the mRNA. To investigate the consequences of ERAP2 deficiency on MHC presentation, we correlated surface MHC class I expression with ERAP2 genotypes in primary lymphocytes. Haplotype B homozygotes had lower levels of MHC class I expressed on the surface of B cells, suggesting that naturally occurring ERAP2 deficiency affects MHC presentation and immune response. Interestingly, an ERAP2 paralog, endoplasmic reticulum aminopeptidase 1 (ERAP1), also shows genetic signatures of balancing selection. Together, our findings link the genetic signatures of selection with an effect on splicing and a cellular phenotype. Although the precise selective pressure that maintains polymorphism is unknown, the demonstrated differences between the ERAP2 splice forms provide important insights into the potential mechanism for the action of selection.
Authors:
Aida M Andrés; Megan Y Dennis; Warren W Kretzschmar; Jennifer L Cannons; Shih-Queen Lee-Lin; Belen Hurle; ; Pamela L Schwartzberg; Scott H Williamson; Carlos D Bustamante; Rasmus Nielsen; Andrew G Clark; Eric D Green
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Intramural     Date:  2010-10-14
Journal Detail:
Title:  PLoS genetics     Volume:  6     ISSN:  1553-7404     ISO Abbreviation:  PLoS Genet.     Publication Date:  2010 Oct 
Date Detail:
Created Date:  2010-10-26     Completed Date:  2011-03-07     Revised Date:  2013-07-03    
Medline Journal Info:
Nlm Unique ID:  101239074     Medline TA:  PLoS Genet     Country:  United States    
Other Details:
Languages:  eng     Pagination:  e1001157     Citation Subset:  IM    
Affiliation:
Genome Technology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland, USA. aida.andres@eva.mpg.de
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MeSH Terms
Descriptor/Qualifier:
African Continental Ancestry Group / genetics
Aminopeptidases / genetics*,  immunology
Antigen Presentation*
Asian Continental Ancestry Group / genetics
European Continental Ancestry Group / genetics
Gene Frequency
Genetics, Population
Genotype
Haplotypes / genetics*
Histocompatibility Antigens Class I / immunology
Humans
Indians, North American / genetics
Phylogeny
Polymorphism, Single Nucleotide
Protein Biosynthesis
RNA Processing, Post-Transcriptional
RNA Splicing
Selection, Genetic*
Chemical
Reg. No./Substance:
0/Histocompatibility Antigens Class I; EC 3.4.11.-/Aminopeptidases; EC 3.4.11.-/ERAP1 protein, human; EC 3.4.11.-/ERAP2 protein, human
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