Document Detail


BLOG 2.0: a software system for character-based species classification with DNA Barcode sequences. What it does, how to use it.
MedLine Citation:
PMID:  23350601     Owner:  NLM     Status:  Publisher    
Abstract/OtherAbstract:
BLOG (Barcoding with LOGic) is a diagnostic and character-based DNA Barcode analysis method. Its aim is to classify specimens to species based on DNA Barcode sequences and on a supervised machine learning approach, using classification rules that compactly characterize species in terms of DNA Barcode locations of key diagnostic nucleotides. The BLOG 2.0 software, its fundamental modules, online/offline user interfaces and recent improvements are described. These improvements affect both methodology and software design, and lead to the availability of different releases on the website http://dmb.iasi.cnr.it/blog-downloads.php. Previous and new experimental tests show that BLOG 2.0 outperforms previous versions as well as other DNA Barcode analysis methods.
Authors:
Emanuel Weitschek; Robin Van Velzen; Giovanni Felici; Paola Bertolazzi
Publication Detail:
Type:  JOURNAL ARTICLE     Date:  2013-1-28
Journal Detail:
Title:  Molecular ecology resources     Volume:  -     ISSN:  1755-0998     ISO Abbreviation:  Mol Ecol Resour     Publication Date:  2013 Jan 
Date Detail:
Created Date:  2013-1-28     Completed Date:  -     Revised Date:  -    
Medline Journal Info:
Nlm Unique ID:  101465604     Medline TA:  Mol Ecol Resour     Country:  -    
Other Details:
Languages:  ENG     Pagination:  -     Citation Subset:  -    
Copyright Information:
© 2013 Blackwell Publishing Ltd.
Affiliation:
Institute of Systems Analysis and Computer Science A. Ruberti, National Research Council, Viale Manzoni 30, 00185, Rome, Italy; Department of Informatics and Automation, Università degli Studi Roma Tre, Via della Vasca Navale 79, 00146, Rome, Italy.
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