| Automated programming for bioinformatics algorithm deployment. | |
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MedLine Citation:
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PMID: 18174185 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
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Many bioinformatics solutions suffer from the lack of usable interface/platform from which results can be analyzed and visualized. Overcoming this hurdle would allow for more widespread dissemination of bioinformatics algorithms within the biological and medical communities. The algorithms should be accessible without extensive technical support or programming knowledge. Here, we propose a dynamic wizard platform that provides users with a Graphical User Interface (GUI) for most Java bioinformatics library toolkits. The application interface is generated in real-time based on the original source code. This platform lets developers focus on designing algorithms and biologists/physicians on testing hypotheses and analyzing results. AVAILABILITY: The open source code can be downloaded from: http://bcl.med.harvard.edu/proteomics/proj/APBA/. |
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Authors:
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Gil Alterovitz; Adnaan Jiwaji; Marco F Ramoni |
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Publication Detail:
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Type: Journal Article Date: 2008-01-03 |
Journal Detail:
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Title: Bioinformatics (Oxford, England) Volume: 24 ISSN: 1367-4811 ISO Abbreviation: Bioinformatics Publication Date: 2008 Feb |
Date Detail:
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Created Date: 2008-02-01 Completed Date: 2008-02-21 Revised Date: 2009-11-04 |
Medline Journal Info:
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Nlm Unique ID: 9808944 Medline TA: Bioinformatics Country: England |
Other Details:
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Languages: eng Pagination: 450-1 Citation Subset: IM |
Affiliation:
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Children's Hospital Informatics Program at the Division of Health Sciences and Technology, Harvard University and Massachusetts Institute of Technology, USA. gil@mit.edu |
Export Citation:
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| MeSH Terms | |
Descriptor/Qualifier:
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Algorithms* Computational Biology / methods* Computer Graphics* Programming Languages* Software* Systems Integration User-Computer Interface* |
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine
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