| Association study of genetic variants of pro-inflammatory chemokine and cytokine genes in systemic lupus erythematosus. | |
| | |
| Jump to Full Text | |
MedLine Citation:
|
PMID: 16719905 Owner: NLM Status: MEDLINE |
Abstract/OtherAbstract:
|
BACKGROUND: Several lines of evidence suggest that chemokines and cytokines play an important role in the inflammatory development and progression of systemic lupus erythematosus. The aim of this study was to evaluate the relevance of functional genetic variations of RANTES, IL-8, IL-1alpha, and MCP-1 for systemic lupus erythematosus. METHODS: The study was conducted on 500 SLE patients and 481 ethnically matched healthy controls. Genotyping of polymorphisms in the RANTES, IL-8, IL-1alpha, and MCP-1 genes were performed using a real-time polymerase chain reaction (PCR) system with pre-developed TaqMan allelic discrimination assay. RESULTS: No significant differences between SLE patients and healthy controls were observed when comparing genotype, allele or haplotype frequencies of the RANTES, IL-8, IL-1alpha, and MCP-1 polymorphisms. In addition, no evidence for association with clinical sub-features of SLE was found. CONCLUSION: These results suggest that the tested functional variation of RANTES, IL-8, IL-1alpha, and MCP-1 genes do not confer a relevant role in the susceptibility or severity of SLE in the Spanish population. |
| | |
Authors:
|
Elena Sánchez; José M Sabio; José L Callejas; Enrique de Ramón; Rosa Garcia-Portales; Francisco J García-Hernández; Juan Jiménez-Alonso; Ma Francisca González-Escribano; Javier Martín; Bobby P Koeleman |
Related Documents
:
|
18687295 - Toxicogenomics -- a novel opportunity to probe lupus susceptibility and pathogenesis. 17657675 - Genotype ser413/ser of pai-2 polymorphism ser413/cys is associated with anti-phospholip... 10685365 - Analysis of genetic polymorphisms at the interleukin-10 and tumour necrosis factor loci... 17464555 - Sequence analysis of tnfrsf13b, encoding taci, in patients with systemic lupus erythema... 20064205 - Integrating phenotype ontologies across multiple species. 12639765 - Neurod polymorphism ala45thr is associated with type 1 diabetes mellitus in czech child... |
Publication Detail:
|
Type: Journal Article; Research Support, Non-U.S. Gov't Date: 2006-05-23 |
Journal Detail:
|
Title: BMC medical genetics Volume: 7 ISSN: 1471-2350 ISO Abbreviation: BMC Med. Genet. Publication Date: 2006 |
Date Detail:
|
Created Date: 2006-07-06 Completed Date: 2006-07-11 Revised Date: 2009-11-18 |
Medline Journal Info:
|
Nlm Unique ID: 100968552 Medline TA: BMC Med Genet Country: England |
Other Details:
|
Languages: eng Pagination: 48 Citation Subset: IM |
Affiliation:
|
Instituto de Parasitología y Biomedicina López-Neyra, CSIC, Granada, Spain. elena@ipb.csic.es |
Export Citation:
|
APA/MLA Format Download EndNote Download BibTex |
| MeSH Terms | |
Descriptor/Qualifier:
|
Adult Chemokine CCL2 / genetics Chemokine CCL5 / genetics Chemokines / genetics* Female Genetic Predisposition to Disease Genotype Humans Inflammation / genetics Interleukin-1 / genetics Interleukin-8 / genetics Interleukins / genetics* Lupus Erythematosus, Systemic / diagnosis, genetics* Male Polymorphism, Single Nucleotide* |
| Chemical | |
Reg. No./Substance:
|
0/Chemokine CCL2; 0/Chemokine CCL5; 0/Chemokines; 0/Interleukin-1; 0/Interleukin-8; 0/Interleukins |
| Comments/Corrections | |
| Full Text | |
|
Journal Information Journal ID (nlm-ta): BMC Med Genet ISSN: 1471-2350 Publisher: BioMed Central, London |
Article Information Download PDF ![]() Copyright ? 2006 S?nchez et al; licensee BioMed Central Ltd. open-access: This is an Open Access article distributed under the terms of the Creative Commons Attribution License (), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Received Day: 10 Month: 3 Year: 2006 Accepted Day: 23 Month: 5 Year: 2006 collection publication date: Year: 2006 Electronic publication date: Day: 23 Month: 5 Year: 2006 Volume: 7First Page: 48 Last Page: 48 ID: 1488833 Publisher Id: 1471-2350-7-48 PubMed Id: 16719905 DOI: 10.1186/1471-2350-7-48 |
| Association study of genetic variants of pro-inflammatory chemokine and cytokine genes in systemic lupus erythematosus | |
| Elena S?nchez1 | Email: elena@ipb.csic.es |
| Jos? M Sabio2 | Email: masabio@terra.es |
| Jos? L Callejas3 | Email: JLCALLEJA@telefonica.net |
| Enrique de Ram?n4 | Email: ederamont@telefonica.net |
| Rosa Garcia-Portales5 | Email: rosagaport@hotmail.com |
| Francisco J Garc?a-Hern?ndez6 | Email: jsanchez01@hvr.sas.cica.es |
| Juan Jim?nez-Alonso2 | Email: jualso@hvn.sas.cica.es |
| Ma Francisca Gonz?lez-Escribano7 | Email: mariaf.gonzalez.sspa@juntadeandalucia.es |
| Javier Mart?n1 | Email: martin@ipb.csic.es |
| Bobby P Koeleman8 | Email: b.p.c.koeleman@med.uu.nl |
|
1Instituto de Parasitolog?a y Biomedicina L?pez-Neyra, CSIC, Granada, Spain |
|
|
2Servicio de Medicina Interna. Hospital Virgen de las Nieves, Granada, Spain |
|
|
3Servicio de Medicina Interna. Hospital Cl?nico San Cecilio, Granada, Spain |
|
|
4Servicio de Medicina Interna. Hospital Carlos-Haya, M?laga, Spain |
|
|
5Servicio de Reumatolog?a, Hospital Virgen de la Victoria, M?laga, Spain |
|
|
6Servicio de Medicina Interna, Hospital Virgen del Rocio, Sevilla, Spain |
|
|
7Servicio de Inmunolog?a. Hospital Virgen del Roc?o, Sevilla, Spain |
|
|
8Department of Biomedical Genetics, Utrecht University Medical Centre, Utrecht, The Netherlands |
|
Systemic lupus erythematosus (SLE) is a chronic and systemic autoimmune disease with a complex pathogenesis involving multiple genetic and environmental factors. The disease is characterized by autoantibody production, abnormalities of immune-inflammatory system function and inflammatory manifestation in several organs. Although the pathogenesis of SLE is unknown, the increased concordance of SLE in monozygotic versus dizygotic twins and familial clustering provide evidences for the role of genetic factors in this disorder [1]. However, the genetic background of SLE is thought to be complex and involves multiple genes encoding different molecules with significant functions in the regulation of the immune system [1-4]. Among the genetic factors believed to influence susceptibility to SLE, the major histocompatibility complex (MHC) alleles show the most significant association. Importantly, several recent studies show that non-HLA genes play a role in the development of SLE [1-4]. In this respect, there are several lines of evidence that chemokines and cytokines play an important role in the inflammatory development and progression of autoimmune diseases as SLE [5-7]. Furthermore, it has been show that SLE patients show an up-regulation of inflammatory molecules [8,9].
Regulated upon activation, normal T cell expressed and secreted (RANTES), interleukin 8 (IL-8) and monocyte chemoattractant protein-1 (MCP-1) are involved in the physiology and pathophysiology of acute and chronic inflammatory processes, by recruitment of monocytes, T lymphocytes and eosinophils to sites of inflammation [10,11]. Substantial evidence suggest that IL-8 and MCP-1, contribute to kidney injury in the glomerulonephritis of SLE, through glomerular leukocyte infiltration [12,13]. Serum levels of these inflammatory chemokines (RANTES, IL8 and MCP-1) are significantly higher in SLE patients than in control subjects, and correlated significant with SLEDAI score, suggesting a role in the pathogenesis of the disease [9]. As a consequence of renal disease, increased urine MCP-1 and urine IL-8 (uMCP-1, uIL-8) levels can be detected in SLE patients during active renal disease [14]. Interestingly some genetic variants within regulatory regions of these genes can affect the transcriptional activity and subsequent protein expression in human. For, RANTES the SNPs -403 G/A (rs2107538) and R3 (rs2306630) T/C, for IL-8 -353 T/A (rs4073) and for +781 C/T (rs2227306) and MCP-1 -2518 G/A (rs1024611) have been correlated to mRNA and or protein expression [15-17].
In addition to these three genes, IL-1? also constitutes a strong candidate gene for SLE, since it is a proinflammatory cytokine that plays and important role in initiating and modulating the immune responses. There is a functional polymorphism in the promoter region of IL-1? gene at position -889 C/T (rs1800587), and the -889 C homozygous genotype has been associated with significantly lower transcriptional activity of the IL-1? gene and lower levels of IL-1? in plasma compared with the TT genotype [18].
Overall, the chemokines RANTES, IL-8, MCP-1and cytokine IL-1? are strong candidate genes for which genetic association studies can shed light on the underlying mechanisms causing the immune dysregulation, such as inappropriate T cell activation or trafficking in SLE.
Therefore, the aim of this work was to test for association of the reported functional polymorphisms in RANTES, IL-8, MCP-1 and IL-1? with SLE susceptibility.
Peripheral blood samples were obtained after written informed consent from 500 SLE patients meeting the American College of Rheumatology (ACR) criteria for SLE [19]. These patients were recruited from five Spanish hospitals: Hospital Virgen de las Nieves and Hospital Clinico (Granada), Hospital Virgen del Rocio (Seville) and Hospital Carlos-Haya and Hospital Virgen de la Victoria (Malaga). Similarly, blood was taken from 481 blood bank and bone marrow donors of the corresponding cities that were included as healthy individuals. Both patient and control groups were of Spanish Caucasian origin and were matched for age and sex. Eighty seven percent of the SLE patients were women, the mean age of SLE patients at diagnosis was 43 ? 13.3 years and the mean age at disease onset of SLE symptoms was 32 ? 15 years. The SLE clinical manifestations studied were articular involvement (76%), renal affectation (37%), cutaneous lesions (62%), hematopoietic alterations (73%), photosensivity (51%), neurological disease (17%) and serositis (28%). The study was approved by all local ethical committees from the corresponding hospitals.
For all the considered SNPs, samples were genotyped using a pre-developed TaqMan allelic discrimination assay. Table 1 shows the part number and reference of each SNP (Applied Biosystems, Foster City, CA, USA). PCR was carried out with mixes consisting of 8 ng of genomic DNA, 2.5 ?l of Taqman master mix, 0.125 ?l of 20x assay mix and ddH2O up to 5 ?l of final volume. The following amplification protocol was used: denaturation at 95?C for 10 min, followed by 40 cycles of denaturation at 92?C for 15 sec and annealing and extension at 60?C for 1 min. After PCR, the genotype of each sample was attributed automatically by measuring the allelic specific fluorescence on the ABI PRISM 7900 Sequence Detection Systems using the SDS 2.2.2 software for allelic discrimination (Applied Biosystems, Foster City, CA, USA).
Allele and genotype frequencies were obtained by direct counting. Hardy-Weinberg equilibrium and statistical analysis to compare allelic and genotypic distributions were performed using the chi-square test. Odds ratio (OR) with 95% confidence intervals (95%CI) were calculated according to Woolf's method. The software used was StatCalc program (Epi Info 2002; Centers of Disease Control and Prevention, Atlanta, GA, USA). For the haplotype analysis, pair-wise linkage disequilibrium measures were investigated and haplotypes were constructed using the expectation-maximization (EM) algorithm implemented in UNPHASED software [20]. P values below 0.05 were considered statistically significant. The power of the study to detect an effect of a polymorphism in disease susceptibility was estimated using the Quanto v 0.5 software (Department of Preventive Medicine University of Southern California, CA, USA).
Table 2 shows the allele and genotype distribution of the RANTES,IL-8, IL-1?, and MCP-1 polymorphisms. For all polymorphisms, the distribution of genotypes did not deviate from that expected from populations in Hardy-Weinberg equilibrium.
Genotyping of RANTES -403 G/A and R3 T/C was performed in 500 and 442 SLE patients and 481 and 438 healthy controls, respectively (table 2). No statistically significant differences were observed when the allele and genotype distribution was compared between SLE patients and healthy controls. Also, we found no association for the two marker haplotypes (table 3).
IL-8 -353 T/A and +781 C/T was genotyping in 439 and 467 SLE patients and 412 and 429 healthy controls, respectively for each polymorphism. We found a similar distribution in the allele and genotype frequencies between SLE patients and controls for both genetic variants. The haplotype estimation for the -353 T/A and +781 C/T IL-8 polymorphisms revealed a strong degree of linkage disequilibrium between the two variants (D' = 0.9) and showed a slight but non-significant increase of the -353T-+781C haplotype in SLE patients (8.5% vs 6.2%, P = 0.08, OR = 1.41, 95%CI = 0.94?2.10) (Table 3).
IL-1? -889 was typing in 417 SLE patients and 420 healthy controls. We did not find any significant difference when allele and genotype frequencies were compared between SLE patients and healthy controls.
Table 2 show the allele and genotype distribution of the MCP-1 -2518 A/G polymorphism in 450 SLE patients and 427 controls. No significant differences in the allele and genotype frequencies of the MCP-1 -2518 A/G polymorphism were found between SLE patients and controls.
In addition, available clinical features of patients with SLE were analysed for possible association with the different alleles or genotypes of these polymorphisms. When we stratified SLE patients according to the presence of renal involvement, no statistically significant differences were observed in the distribution of RANTES -403, RANTES R3, IL-1? -889 and MCP-1 -2518 polymorphisms between SLE patients with and without lupus nephritis (table 4). Regarding IL-8 polymorphisms, the AT -353 genotype and the -353T/+781C haplotype showed an increased among lupus patients without nephritis compared with patients with nephritis (39.2% vs 49.4%, P = 0.03, OR = 0.66, 95%CI = 0.44?0.99 for AT -353 genotype) (5.7% vs 10%, P = 0.05, OR = 0.55, 95%CI = 0.28?1.05 for -353T/+781C haplotype) (table 4).
Similarly, no significant differences were observed between all these genetic variants and the following variables: sex, age at onset, articular involvement, cutaneous lesions, photosensitivity, hematological alterations, neurological disorders and serositis (data not shown).
In this work, we have tested six functional polymorphisms of four strong candidate genes for association with SLE. No evidence of association was detected for RANTES (-403 G/A, R3 T/C),IL-8 (-353 A/T, +781 C/T), IL-1? (-889C/T), and MCP-1 (-2518 G/A) polymorphisms. However, a significant association was observed for the IL-8 haplotype with SLE nephritis, which cannot be considered as significant after correction for multiple comparisons.
All these genes have been previously associated with susceptibility and development to several autoimmune disorders, included SLE [16,21-27]. For example, recent studies in Asian populations found another RANTES polymorphism (-28C/G) to be associated with increased risk of developing SLE, but failed to detect any association of RANTES -403 polymorphisms with SLE [22,23]. We did not test the -28C/G variant as -28G allele is relatively uncommon in Caucasians [28].
The genetic variant IL-8 -845C showed a high association to severe lupus nephritis (LN) in an African American population [16], but also this allele has a very low frequency in Caucasian populations [16,29]. The trend of association that we have found between the haplotypes and LN and the reported association of other IL-8 variants this African American population, shows that variants in this chemokine may have a minor influence on the risk of developing nephritis in SLE patients.
Similar observation could be made for the reported association of the IL-1? -889C/T variant to SLE in a White and African American populations from United States, which we failed to replicate [30]. With regard to the MCP-1 -2518 polymorphism, an American study showed that an A/G or G/G genotype may predispose to the development of SLE and further indicated that SLE patients with these genotypes may be at higher risk of developing LN [3].
The fact that we do not observe an association and fail to confirm some previous studies may be caused by a Type II error (false-negative). This is however unlikely because our sample has more than 80% power to detect the relative risk similar to the other studies at the 5% significance level. Furthermore, the genotype frequencies did not differ from Hardy-Weinberg expectations, and allele and genotype frequencies in our Spanish population are similar to those reported previously in other Caucasian populations [16,26,31,32]. The failure to replicate reported associations is a common event in the search for genetic determinants of complex diseases, due either to genuine population heterogeneity or a different sort of bias [33]. The lack of replication in our population may alternatively be explained by a different racial composition of that study from ours, or that presence of environmental factors to which the Asian, American, and African populations, but not the Spanish population, are exposed. In addition, genetic differences are known to exist between the different ethnic groups, such as, African American and Caucasians.
In conclusion, our results suggest that functional genetics variation in RANTES, IL-8, IL-1?, and MCP-1 do not play a major role in SLE susceptibility in the Spanish population.
The author(s) declare that they have no competing interests.
ES carried out the genotyping and statistical analysis and drafted the manuscript, JMS collected the samples, JLC collected the samples, EDR collected the samples, RGP collected the samples, FJGH collected the samples, JJA collected the samples, MFGE collected the samples, JM participated in the manuscript design and coordination and helped to draft the manuscript, BK participated in the manuscript design, reviewed the statistical analysis and helped to draft the manuscript.
The pre-publication history for this paper can be accessed here:
This work was supported by grant SAF03-3460 from Plan Nacional de I+D+I, and in part by the Junta de Andaluc?a, grupo CTS-180. We thank Sasha Zhernakova for her excellent technical assistance. Finally, we thank Cisca Wijmenga for support.
References
| Wakeland EK,Liu K,Graham RR,Behrens TW. Delineating the genetic basis of systemic lupus erythematosusImmunity 2001;15:397–408. [pmid: 11567630] [doi: 10.1016/S1074-7613(01)00201-1] | |
| Cantor RM,Yuan J,Napier S,Kono N,Grossman JM,Hahn BH,Tsao BP. Systemic lupus erythematosus genome scan: support for linkage at 1q23, 2q33, 16q12-13, and 17q21-23 and novel evidence at 3p24, 10q23-24, 13q32, and 18q22-23Arthritis Rheum 2004;50:3203–3210. [pmid: 15476245] [doi: 10.1002/art.20511] | |
| Tucci M,Barnes EV,Sobel ES,Croker BP,Segal MS,Reeves WH,Richards HB. Strong association of a functional polymorphism in the monocyte chemoattractant protein 1 promoter gene with lupus nephritisArthritis Rheum 2004;50:1842–1849. [pmid: 15188361] [doi: 10.1002/art.20266] | |
| Prokunina L,Alarcon-Riquelme M. The genetic basis of systemic lupus erythematosus--knowledge of today and thoughts for tomorrowHum Mol Genet 2004;13 Spec No 1:R143–8. [pmid: 14764622] [doi: 10.1093/hmg/ddh076] | |
| Kim HL,Lee DS,Yang SH,Lim CS,Chung JH,Kim S,Lee JS,Kim YS. The polymorphism of monocyte chemoattractant protein-1 is associated with the renal disease of SLEAm J Kidney Dis 2002;40:1146–1152. [pmid: 12460032] [doi: 10.1053/ajkd.2002.36858] | |
| Gibson AW,Edberg JC,Wu J,Westendorp RG,Huizinga TW,Kimberly RP. Novel single nucleotide polymorphisms in the distal IL-10 promoter affect IL-10 production and enhance the risk of systemic lupus erythematosusJ Immunol 2001;166:3915–3922. [pmid: 11238636] | |
| Mehrian R,Quismorio FPJ,Strassmann G,Stimmler MM,Horwitz DA,Kitridou RC,Gauderman WJ,Morrison J,Brautbar C,Jacob CO. Synergistic effect between IL-10 and bcl-2 genotypes in determining susceptibility to systemic lupus erythematosusArthritis Rheum 1998;41:596–602. [pmid: 9550468] [doi: 10.1002/1529-0131(199804)41:4<596::AID-ART6>3.0.CO;2-2] | |
| Andersen LS,Petersen J,Svenson M,Bendtzen K. Production of IL-1beta, IL-1 receptor antagonist and IL-10 by mononuclear cells from patients with SLEAutoimmunity 1999;30:235–242. [pmid: 10524499] | |
| Lit LC,Wong CK,Tam LS,Li EK,Lam CW. Raised plasma concentration and ex vivo production of inflammatory chemokines in patients with systemic lupus erythematosusAnn Rheum Dis 2006;65:209–215. [pmid: 15975968] [doi: 10.1136/ard.2005.038315] | |
| Aoki M,Pawankar R,Niimi Y,Kawana S. Mast cells in basal cell carcinoma express VEGF, IL-8 and RANTESInt Arch Allergy Immunol 2003;130:216–223. [pmid: 12660426] [doi: 10.1159/000069515] | |
| Tesch GH,Schwarting A,Kinoshita K,Lan HY,Rollins BJ,Kelley VR. Monocyte chemoattractant protein-1 promotes macrophage-mediated tubular injury, but not glomerular injury, in nephrotoxic serum nephritisJ Clin Invest 1999;103:73–80. [pmid: 9884336] | |
| Rovin BH,Phan LT. Chemotactic factors and renal inflammationAm J Kidney Dis 1998;31:1065–1084. [pmid: 9631856] | |
| Kelley VR,Rovin BH. Chemokines: therapeutic targets for autoimmune and inflammatory renal diseaseSpringer Semin Immunopathol 2003;24:411–421. [pmid: 12778336] [doi: 10.1007/s00281-003-0124-4] | |
| Rovin BH,Song H,Birmingham DJ,Hebert LA,Yu CY,Nagaraja HN. Urine chemokines as biomarkers of human systemic lupus erythematosus activityJ Am Soc Nephrol 2005;16:467–473. [pmid: 15601744] [doi: 10.1681/ASN.2004080658] | |
| Liu H,Chao D,Nakayama EE,Taguchi H,Goto M,Xin X,Takamatsu JK,Saito H,Ishikawa Y,Akaza T,Juji T,Takebe Y,Ohishi T,Fukutake K,Maruyama Y,Yashiki S,Sonoda S,Nakamura T,Nagai Y,Iwamoto A,Shioda T. Polymorphism in RANTES chemokine promoter affects HIV-1 disease progressionProc Natl Acad Sci U S A 1999;96:4581–4585. [pmid: 10200305] [doi: 10.1073/pnas.96.8.4581] | |
| Rovin BH,Lu L,Zhang X. A novel interleukin-8 polymorphism is associated with severe systemic lupus erythematosus nephritisKidney Int 2002;62:261–265. [pmid: 12081586] [doi: 10.1046/j.1523-1755.2002.00438.x] | |
| Rovin BH,Lu L,Saxena R. A novel polymorphism in the MCP-1 gene regulatory region that influences MCP-1 expressionBiochem Biophys Res Commun 1999;259:344–348. [pmid: 10362511] [doi: 10.1006/bbrc.1999.0796] | |
| Dominici R,Cattaneo M,Malferrari G,Archi D,Mariani C,Grimaldi LM,Biunno I. Cloning and functional analysis of the allelic polymorphism in the transcription regulatory region of interleukin-1 alphaImmunogenetics 2002;54:82–86. [pmid: 12037600] [doi: 10.1007/s00251-002-0445-9] | |
| Hochberg MC. Updating the American College of Rheumatology revised criteria for the classification of systemic lupus erythematosusArthritis Rheum 1997;40:1725. [pmid: 9324032] | |
| Dudbridge F. Pedigree disequilibrium tests for multilocus haplotypesGenet Epidemiol 2003;25:115–121. [pmid: 12916020] [doi: 10.1002/gepi.10252] | |
| Wang CR,Guo HR,Liu MF. RANTES promoter polymorphism as a genetic risk factor for rheumatoid arthritis in the ChineseClin Exp Rheumatol 2005;23:379–384. [pmid: 15971427] | |
| Liao CH,Yao TC,Chung HT,See LC,Kuo ML,Huang JL. Polymorphisms in the promoter region of RANTES and the regulatory region of monocyte chemoattractant protein-1 among Chinese children with systemic lupus erythematosusJ Rheumatol 2004;31:2062–2067. [pmid: 15468376] | |
| Ye DQ,Yang SG,Li XP,Hu YS,Yin J,Zhang GQ,Liu HH,Wang Q,Zhang KC,Dong MX,Zhang XJ. Polymorphisms in the promoter region of RANTES in Han Chinese and their relationship with systemic lupus erythematosusArch Dermatol Res 2005;297:108–113. [pmid: 16032408] [doi: 10.1007/s00403-005-0581-9] | |
| Makki RF,al Sharif F,Gonzalez-Gay MA,Garcia-Porrua C,Ollier WE,Hajeer AH. RANTES gene polymorphism in polymyalgia rheumatica, giant cell arteritis and rheumatoid arthritisClin Exp Rheumatol 2000;18:391–393. [pmid: 10895380] | |
| Chen RH,Chen WC,Wang TY,Tsai CH,Tsai FJ. Lack of association between pro-inflammatory cytokine (IL-6, IL-8 and TNF-alpha) gene polymorphisms and Graves' diseaseInt J Immunogenet 2005;32:343–347. [pmid: 16313297] [doi: 10.1111/j.1744-313X.2005.00536.x] | |
| Sciacca FL,Ferri C,Veglia F,Andreetta F,Mantegazza R,Cornelio F,Franciotta D,Piccolo G,Cosi V,Batocchi AP,Evoli A,Grimaldi LM. IL-1 genes in myasthenia gravis: IL-1A -889 polymorphism associated with sex and age of disease onsetJ Neuroimmunol 2002;122:94–99. [pmid: 11777547] [doi: 10.1016/S0165-5728(01)00449-0] | |
| Yang B,Houlberg K,Millward A,Demaine A. Polymorphisms of chemokine and chemokine receptor genes in Type 1 diabetes mellitus and its complicationsCytokine 2004;26:114–121. [pmid: 15135805] [doi: 10.1016/j.cyto.2004.01.005] | |
| McDermott DH,Beecroft MJ,Kleeberger CA,Al-Sharif FM,Ollier WE,Zimmerman PA,Boatin BA,Leitman SF,Detels R,Hajeer AH,Murphy PM. Chemokine RANTES promoter polymorphism affects risk of both HIV infection and disease progression in the Multicenter AIDS Cohort StudyAids 2000;14:2671–2678. [pmid: 11125885] [doi: 10.1097/00002030-200012010-00006] | |
| Renzoni E,Lympany P,Sestini P,Pantelidis P,Wells A,Black C,Welsh K,Bunn C,Knight C,Foley P,du Bois RM. Distribution of novel polymorphisms of the interleukin-8 and CXC receptor 1 and 2 genes in systemic sclerosis and cryptogenic fibrosing alveolitisArthritis Rheum 2000;43:1633–1640. [pmid: 10902769] [doi: 10.1002/1529-0131(200007)43:7<1633::AID-ANR29>3.0.CO;2-9] | |
| Parks CG,Cooper GS,Dooley MA,Treadwell EL,St Clair EW,Gilkeson GS,Pandey JP. Systemic lupus erythematosus and genetic variation in the interleukin 1 gene cluster: a population based study in the southeastern United StatesAnn Rheum Dis 2004;63:91–94. [pmid: 14672899] [doi: 10.1136/ard.2003.007336] | |
| Huerta C,Alvarez V,Mata IF,Coto E,Ribacoba R,Martinez C,Blazquez M,Guisasola LM,Salvador C,Lahoz CH,Pena J. Chemokines (RANTES and MCP-1) and chemokine-receptors (CCR2 and CCR5) gene polymorphisms in Alzheimer's and Parkinson's diseaseNeurosci Lett 2004;370:151–154. [pmid: 15488313] [doi: 10.1016/j.neulet.2004.08.016] | |
| Aguilar F,Gonzalez-Escribano MF,Sanchez-Roman J,Nunez-Roldan A. MCP-1 promoter polymorphism in Spanish patients with systemic lupus erythematosusTissue Antigens 2001;58:335–338. [pmid: 11844145] [doi: 10.1034/j.1399-0039.2001.580508.x] | |
| Ioannidis JP,Ntzani EE,Trikalinos TA,Contopoulos-Ioannidis DG. Replication validity of genetic association studiesNat Genet 2001;29:306–309. [pmid: 11600885] [doi: 10.1038/ng749] |
Tables
Taqman probes part number used for genotyping.
| Polymorphisms | Part number |
| RANTES -403 G/A (rs2107538) | C_15874407_10 |
| RANTES R3 C/T (rs2306630) | C_26625663_10 |
| IL-8 -353 A/T (rs4073) | C_11748116_10 |
| IL-8 +781 C/T (rs2227306) | C_11748169_10 |
| IL-1? -889 C/T (rs1800587) | C_9546481_20 |
| MCP-1 -2518 G/A (rs1024611) | C_2590362_10 |
Allele and genotype frequencies of RANTES, IL-8, MCP-1 and IL-1? polymorphisms in SLE patients and healthy controls.
| SLE patients | Controls | P | OR (95%CI) | |||
| RANTES -403 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| GG | 369 | 73.8 | 333 | 69.3 | 0.1 | |
| GA | 113 | 22.6 | 135 | 28 | 0.04 | 0.75 (0.55?1.01) |
| AA | 18 | 3.6 | 13 | 2.7 | 0.4 | |
| Alleles | ||||||
| G | 851 | 85 | 801 | 83.3 | ||
| A | 149 | 15 | 161 | 16.7 | 0.2 | |
|
|
||||||
| RANTES R3 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| CC | 326 | 73.8 | 340 | 77.6 | 0.06 | |
| CT | 104 | 23.5 | 90 | 20.6 | 0.3 | |
| TT | 12 | 2.7 | 8 | 1.8 | 0.4 | |
| Alleles | ||||||
| C | 756 | 85.5 | 770 | 88 | ||
| T | 128 | 14.5 | 106 | 12 | 0.1 | |
|
|
||||||
| IL-8 -353 | n | % | n | % | ||
|
|
||||||
| Genoypes | ||||||
| AA | 126 | 28.7 | 125 | 30.3 | 0.6 | |
| AT | 215 | 49 | 194 | 47.1 | 0.5 | |
| TT | 98 | 22.3 | 93 | 22.6 | 0.9 | |
| Alleles | ||||||
| A | 467 | 53.2 | 444 | 53.8 | ||
| T | 411 | 46.8 | 380 | 46.2 | 0.7 | |
|
|
||||||
| IL-8 +781 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| CC | 164 | 35 | 143 | 33.3 | 0.6 | |
| CT | 238 | 51 | 221 | 51.5 | 0.8 | |
| TT | 65 | 14 | 65 | 15.2 | 0.6 | |
| Alleles | ||||||
| C | 566 | 60.6 | 507 | 59.1 | ||
| T | 368 | 39.4 | 351 | 40.9 | 0.5 | |
|
|
||||||
| IL-1? -889 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| CC | 220 | 52.7 | 209 | 49.7 | 0.4 | |
| CT | 164 | 39.3 | 166 | 39.5 | 0.9 | |
| TT | 33 | 7.9 | 45 | 10.7 | 0.2 | |
| Alleles | ||||||
| C | 604 | 72.4 | 584 | 69.5 | ||
| T | 230 | 27.6 | 256 | 30.5 | 0.2 | |
|
|
||||||
| MCP-1 -2518 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| AA | 238 | 57.2 | 250 | 58.5 | 0.6 | |
| AG | 173 | 35 | 154 | 36 | 0.7 | |
| GG | 39 | 7.8 | 23 | 5.4 | 0.1 | |
| Alleles | ||||||
| A | 739 | 74.6 | 654 | 76.6 | ||
| G | 251 | 25.4 | 200 | 23.4 | 0.3 | |
Haplotype frequencies for RANTES and IL-8 polymorphisms in SLE patients and controls.
| Gene | Haplotype | SLE patients | Healthy controls | Pvalue | OR (95%CI) |
| RANTES | |||||
|
|
|||||
| -403A/R3C | 25 (5.7) | 25 (5.8) | ns | ||
| -403A/R3T | 50 (11.3) | 40 (9.3) | ns | ||
| -403G/R3C | 355 (80.7) | 356 (83.4) | ns | ||
| -403G/R3T | 10 (2.3) | 6 (1.5) | ns | ||
|
|
|||||
| IL-8 | |||||
|
|
|||||
| -353T/+781C | 69 (8.6) | 48 (6.2) | 0.08 | 1.41 (0.94?2.10) | |
| -353T/+781T | 316 (39.2) | 303 (39.4) | ns | ||
| -353A/+781C | 403 (50) | 406 (52.7) | ns | ||
| -353A/+781T | 18 (2.2) | 13 (1.7) | ns | ||
Relationship between RANTES, IL-8, MCP-1 and IL-1? polymorphisms and the presence of nephritis in SLE Spanish patients.
| SLE with nephritis | SLE without nephritis | P | OR (95%CI) | |||
| RANTES -403 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| GG | 136 | 73.5 | 230 | 73 | 0.9 | |
| GA | 44 | 23.8 | 71 | 22.5 | 0.7 | |
| AA | 5 | 2.7 | 14 | 4.4 | 0.3 | |
| Alleles | ||||||
| G | 54 | 14.6 | 99 | 15.7 | ||
| A | 316 | 85.4 | 531 | 84.3 | 0.6 | |
|
|
||||||
| RANTES R3 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| CC | 89 | 77.4 | 225 | 68.8 | 0.08 | |
| CT | 23 | 20 | 92 | 28.1 | 0.1 | |
| TT | 3 | 2.6 | 10 | 3 | 0.8 | |
| Alleles | ||||||
| C | 201 | 87.4 | 542 | 82.9 | ||
| T | 29 | 12.6 | 112 | 12.1 | 0.1 | |
|
|
||||||
| IL-8 -353 | n | % | n | % | ||
|
|
||||||
| Genoypes | ||||||
| AA | 47 | 26.7 | 59 | 22.4 | 0.3 | |
| AT | 69 | 39.2 | 130 | 49.4 | 0.03 | 0.66 (0.44?0.99) |
| TT | 60 | 34.1 | 74 | 28.2 | 0.2 | |
| Alleles | ||||||
| A | 163 | 46.3 | 248 | 47.2 | ||
| T | 189 | 53.7 | 278 | 52.8 | 0.8 | |
|
|
||||||
| IL-8 +781 | n | % | n | % | ||
|
|
||||||
| Genotypes | ||||||
| CC | 74 | 39.6 | 99 | 35.3 | 0.3 | |
| CT | 85 | 45.4 | 151 | 54 | 0.07 | |
| TT | 28 | 15 | 30 | 10.7 | 0.2 | |
| Alleles | ||||||
| C | 233 | 62.3 | 349 | 62.3 | ||
| T | 141 | 37.7 | 211 | 37.7 | 0.9 | |
|
|
||||||
| IL8 -353T/+781C | ||||||
|
|
||||||
| Haplotypes | ||||||
| -353T/+781C | 15 | 5.7 | 39 | 10 | 0.05 | 0.55 (0.21?8.05) |
| -353T/+781T | 104 | 39.7 | 149 | 38.2 | 0.7 | |
| -353A/+781C | 140 | 53.4 | 193 | 49.5 | 0.3 | |
| -353A/+781T | 3 | 1.2 | 9 | 2.3 | 0.3 | |
|
|
||||||
| IL-1? -889 | ||||||
|
|
||||||
| Genotypes | ||||||
| CC | 72 | 49.3 | 138 | 50.9 | 0.7 | |
| CT | 59 | 40.4 | 115 | 42.4 | 0.7 | |
| TT | 15 | 10.3 | 18 | 6.7 | 0.2 | |
| Alleles | ||||||
| C | 203 | 69.5 | 391 | 72.1 | ||
| T | 89 | 30.5 | 151 | 27.9 | 0.4 | |
|
|
||||||
| MCP-1 -2518 | ||||||
|
|
||||||
| Genotypes | ||||||
| AA | 86 | 54.4 | 170 | 58.2 | 0.4 | |
| AG | 61 | 38.6 | 100 | 34.2 | 0.3 | |
| GG | 11 | 7 | 22 | 7.5 | 0.8 | |
| Alleles | ||||||
| A | 233 | 73.7 | 440 | 75.3 | ||
| G | 83 | 26.3 | 144 | 24.7 | 0.6 | |
Article Categories:
|
|
Previous Document: Texture discrimination and multi-unit recording in the rat vibrissal nerve.
Next Document: Vibratory stimulation increase the electro-cutaneous sensory detection and pain thresholds in women ...
