Document Detail


3D medical volume reconstruction using web services.
MedLine Citation:
PMID:  18336808     Owner:  NLM     Status:  MEDLINE    
Abstract/OtherAbstract:
We address the problem of 3D medical volume reconstruction using web services. The use of proposed web services is motivated by the fact that the problem of 3D medical volume reconstruction requires significant computer resources and human expertise in medical and computer science areas. Web services are implemented as an additional layer to a dataflow framework called data to knowledge. In the collaboration between UIC and NCSA, pre-processed input images at NCSA are made accessible to medical collaborators for registration. Every time UIC medical collaborators inspected images and selected corresponding features for registration, the web service at NCSA is contacted and the registration processing query is executed using the image to knowledge library of registration methods. Co-registered frames are returned for verification by medical collaborators in a new window. In this paper, we present 3D volume reconstruction problem requirements and the architecture of the developed prototype system at http://isda.ncsa.uiuc.edu/MedVolume. We also explain the tradeoffs of our system design and provide experimental data to support our system implementation. The prototype system has been used for multiple 3D volume reconstructions of blood vessels and vasculogenic mimicry patterns in histological sections of uveal melanoma studied by fluorescent confocal laser scanning microscope.
Authors:
Rob Kooper; Andrew Shirk; Sang-Chul Lee; Amy Lin; Robert Folberg; Peter Bajcsy
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Publication Detail:
Type:  Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't     Date:  2008-03-11
Journal Detail:
Title:  Computers in biology and medicine     Volume:  38     ISSN:  0010-4825     ISO Abbreviation:  Comput. Biol. Med.     Publication Date:  2008 Apr 
Date Detail:
Created Date:  2008-03-31     Completed Date:  2008-09-22     Revised Date:  2013-06-05    
Medline Journal Info:
Nlm Unique ID:  1250250     Medline TA:  Comput Biol Med     Country:  United States    
Other Details:
Languages:  eng     Pagination:  490-500     Citation Subset:  IM    
Affiliation:
National Center for Supercomputing Applications (NCSA), University of Illinois at Urbana-Champaign (UIUC), 1205 W. Clark Street, Urbana, IL 61801, USA.
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MeSH Terms
Descriptor/Qualifier:
Algorithms*
Artificial Intelligence
Data Compression
Database Management Systems
Databases as Topic*
Decision Support Systems, Clinical
Expert Systems
Humans
Image Processing, Computer-Assisted / methods*
Imaging, Three-Dimensional / methods*
Internet*
Knowledge Bases*
Microscopy, Confocal
User-Computer Interface*
Grant Support
ID/Acronym/Agency:
R01 EY010457-07/EY/NEI NIH HHS; R01 EY010457-13/EY/NEI NIH HHS; R01 EY10457/EY/NEI NIH HHS
Comments/Corrections

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine


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