A Bayesian statistical model and estimation methodology based on forward projection adaptive Markov chain Monte Carlo is developed in order to perform the calibration of a high-dimensional nonlinear system of ordinary differential equations representing an epidemic model for human papillomavirus types 6 and 11 (HPV-6, HPV-11). The model is compartmental and ...

Theoretical and empirical results demonstrate that the G-matrix, which summarizes additive genetic variances and covariances of quantitative traits, changes over time. Such evolution and fluctuation of the G-matrix could potentially have wide-ranging effects on phenotypic evolution. Nevertheless, no studies have yet addressed G-matrix stability and evolution when movement of an ...

A multi-compartment physiologically based pharmacokinetic (PBPK) model was developed to describe the behavior of Cr(III) and Cr(VI) in rats and mice following long-term oral exposure. Tissue compartments were included for GI lumen, oral mucosa, forestomach/stomach, small intestinal mucosa (duodenum, jejunum, ileum), blood, liver, kidney, bone, and a combined compartment for ...

In order to understand the physiopathology of epilepsies and develop antiepileptic drugs, animal models have been developed. These models appear to be valuable predictors of treatment efficacy; however, several of the currently used models remain questionable and probably inappropriate for the search for new treatments, in particular for epilepsies that ...

Congenital Disorder of Glycosylation PMM2-CDG results from mutations in PMM2, which encodes the phosphomannomutase that converts mannose-6-P to mannose-1-P. Patients have wide-spectrum clinical abnormalities associated with impaired protein N-glycosylation. Though widely proposed that PMM2 deficiency depletes mannose-1-P, a precursor of GDP-mannose, and consequently suppresses lipid-linked oligosaccharide (LLO) levels needed for ...

Appropriate animal models are required to test medical countermeasures to bioterrorist threats. To that end, we characterized a nonhuman primate (NHP) inhalational anthrax therapeutic model for use in testing anthrax therapeutic medical countermeasures according to the U.S. Food and Drug Administration Animal Rule. A clinical profile was recorded for each ...

The evolution of a line of vehicles on a ring is modeled by means of first-order car-following models. Three generic models describe the speed of a vehicle as a function of the spacing ahead and the speed of the predecessor. The first model is a basic one with no delay. ...

Adaptive beamformers (ABFs) rely on the knowledge of ensemble covariance matrix (ECM), which is usually not known a priori. The ECM is often estimated from the sample covariance matrix (SCM). When the sample size is limited, the SCM may not converge to the ECM. ABF performance is then determined by ...

We investigate the dynamics of a broad class of stochastic copying processes on a network that includes examples from population genetics (spatially structured Wright-Fisher models), ecology (Hubbell-type models), linguistics (the utterance selection model), and opinion dynamics (the voter model) as special cases. These models all have absorbing states of fixation ...

We study the diffusion of influence in random multiplex networks where links can be of r different types, and, for a given content (e.g., rumor, product, or political view), each link type is associated with a content-dependent parameter c_{i} in [0,∞] that measures the relative bias type i links have ...

Thiarabine was evaluated for antitumor activity in seven human leukemia, lymphoma, and myeloma xenograft models to explore the activity in hematological malignancies. Thiarabine was active against all of the human leukemia and lymphoma lines tested, being curative against HL-60 leukemia and AS283 lymphoma and effecting tumor regressions in CCRF-CEM, MOLT-4, ...

Biofuel blends of 10% ethanol (EtOH) and gasoline are common in the USA, and higher EtOH concentrations are being considered (15-85%). Currently, no physiologically-based pharmacokinetic (PBPK) models are available to describe the kinetics of EtOH-based biofuels. PBPK models were developed to describe life-stage differences in the kinetics of EtOH alone ...

Micronucleus (MN*) formation is a well-established endpoint in genetic toxicology; studies designed to examine MN formation in vivo have been conducted for decades. Conditions that cause double-strand breaks or disrupt the proper segregation of chromosomes during division result in an increase in MN frequency. Thus this endpoint is commonly employed ...

Models that can project ecosystem dynamics under changing environmental conditions are in high demand. The application of such models, however, requires model validation together with analyses of model uncertainties, which are both often overlooked. We carried out a simplified model uncertainty and sensitivity analysis on an Ecopath with Ecosim food-web ...

We investigated native English talkers' phonetic accommodation to a native or nonnative model talker in a passive auditory exposure setting. We performed a phonetic accommodation experiment, following the procedure of Goldinger & Azuma (2004). Specifically, the imitators read monosyllabic words, disyllabic words, and sentences before and after perceptual exposure to ...

Myosin VI is the only known reverse-direction myosin motor. It has an unprecedented means of amplifying movements within the motor involving rearrangements of the converter subdomain at the C terminus of the motor and an unusual lever arm projecting from the converter. While the average step size of a myosin ...

BACKGROUND: The mechanically separated meat (MSM) of Nile tilapia is an example of a by-product that can be used in the development of new foods. The aim of this study was to optimise the mixture of different flours in the development of a freeze-dried mixture of fish croquette using Nile ...

Numerous vertebrates employ one or more autotomous body parts as an anti-predation mechanism. Many lizards possess an autotomous tail that is brightly colored blue, which has been suggested to either serve as a decoy mechanism to divert predator attention to the autotomous body part, as an interspecific signal, or as ...

Temporal lobe epilepsy (TLE) is the most common form of drug-resistant epilepsy and several rodent models allow studying the pathophysiology of this disorder. One of the best characterized models of TLE is the pilocarpine model. The model has been widely used in rats, but relatively few studies report data obtained ...

The gas holdup time (t(M)) is a dominant parameter in gas chromatographic retention models. The difference equation (DE) model proposed by Wu et al. (J. Chromatogr. A 2012, http://dx.doi.org/10.1016/j.chroma.2012.07.077) excluded t(M). In the present paper, we propose that the relationship between the adjusted retention time [Formula: see text] and carbon ...

The use of whole body physiological-based pharmacokinetic (PBPK) models linked with in vitro-in vivo extrapolation (IVIVE) of kinetic parameters from laboratory experiments, has become embedded within many of the pharmaceutical industry and is used even as part of regulatory submissions. These include the influence of transporter proteins on drug disposition, ...

The physicochemical properties, retention parameters (R(M)(0)), partition coefficients (logP(OW)), and pK(a) values for a series of thirteen 1,7-bis(aminoalkyl) diazachrysene (1,7-DAAC) derivatives were determined in order to reveal the characteristics responsible for their biological behavior. The investigated compounds inhibit three unrelated pathogens (the Botulinum neurotoxin serotype A light chain (BoNT/A LC), ...

AIM:: The study aims were to characterize risperidone and (±)-9-hydroxyrisperidone pharmacokinetic (PK) variability in children and adolescents and to evaluate covariate effects on PK parameters. METHODS:: Steady-state samples were drawn at predose, 1, 2, 4, and 7 hours postdose; cytochrome P450 2D6 (CYP2D6) genotypes were available for 28 subjects. A ...

Despite considerable progress in the past decades, protein structure prediction remains one of the major unsolved problems in computational biology. Angular-sampling-based methods have been extensively studied recently due to their ability to capture the continuous conformational space of protein structures. The literature has focused on using a variety of parametric ...

Accurate estimation of the diffuse attenuation coefficient is critical for our understanding and modelling of key physical, chemical, and biological processes in water bodies. For extremely turbid, shallow, Lake Taihu in China, we synchronously monitored the diffuse attenuation coefficient of photosynthetically active radiation (K_d(PAR)) and the remote sensing reflectance at ...

The production of charm quark jets in association with electroweak gauge bosons at the LHC can be used as a tool to constrain quark parton distribution functions (PDFs). Motivated by recent measurements at the Tevatron and LHC, we calculate cross sections for W/Z+c, comparing these to W/Z+jet, for various PDF ...

Pairs of diffusion chambers with different air exchange rates are used in a large-scale survey to determine radon and thoron, separately. When they are enclosed in radon-proof bags for keeping after the exposure, since radon does not escape out immediately from the low-diffusion chamber, it leads to further exposure in ...

The aim of this study was to investigate the effects of Cervi cornus Colla (CCC) in the reconstruction of skin equivalent (SE). H&E staining showed that SE containing hyaluronic acid (HA) or HA and CCC had a thicker epidermis than the control SE. Immunohistochemical staining showed that p63 was mainly ...

The aim of this study was to examine the associations between women's actual:ideal weight-related self-discrepancies and experiences of weight-related shame, guilt, and authentic pride using self-discrepancy (Higgins, 1987) and self-conscious emotion (Tracy & Robins, 2004) theories as guiding frameworks. Participants (N=398) completed self-report questionnaires. Main analyses involved polynomial regressions, followed ...

Building on our recently introduced library-based Monte Carlo (LBMC) approach, we describe a flexible protocol for mixed coarse-grained (CG)/all-atom (AA) simulation of proteins and ligands. In the present implementation of LBMC, protein side chain configurations are pre-calculated and stored in libraries, while bonded interactions along the backbone are treated explicitly. ...

Reproductive males face a trade-off between expenditure on precopulatory male-male competition-increasing the number of females that they secure as mates-and sperm competition-increasing their fertilization success with those females. Previous sperm allocation models have focused on scramble competition in which males compete by searching for mates and the number of matings ...

A new TRS document on Transfer of radionuclides to Wildlife has compiled equilibrium CR(wo-media) values for a variety of radionuclides and ecosystems. Assessment tools such as the ERICA Tool use equilibrium whole organism concentration ratios (CR(wo-media)) to predict radionuclide activity concentrations in wildlife from those in media (e.g. water). The ...

Freezing of gait (FOG) is a debilitating feature of Parkinson's disease (PD) and other forms of parkinsonism. The anatomical or pathophysiological correlates are poorly understood largely due to the lack of a well-established animal model. Here we studied whether FOG is reproduced in the non-human primate (NHP) model of PD. ...

An extensive set of column experiments was performed with freshly harvested Cryptosporidium parvum oocysts to evaluate the effects of solution chemistry, surface coatings, interactions with other suspended particles, and pore fluid velocity on the fate and transport of this widely occurring waterborne pathogen in sandy porous media. We complemented and ...

A difference equation (DE) model is developed using the methylene retention increment (Δtz) of n-alkanes to avoid the influence of gas holdup time (tM). The effects of the equation orders (1st-5th) on the accuracy of a curve fitting show that a linear equation (LE) is less satisfactory and it is ...

Land-use regression (LUR) models have been developed to estimate spatial distributions of traffic-related pollutants. Several studies have examined spatial autocorrelation among residuals in LUR models, but few utilized spatial residual information in model prediction, or examined the impact of modeling methods, monitoring site selection, or traffic data quality on LUR ...

Meta-analytical approach was used to quantitatively synthesize the effect of immunocastration on growth, carcass, meat quality, reproductive organs and boar taint compounds. Altogether, 41 papers were collected for effect size (θ) calculation and the comparisons were made with entire males (EM) and surgical castrates (SC). The data for reproductive organs ...

Sacrificing model animals is required for developing effective drugs before being used in human beings. In Japan today, at least 4,210,000 mice and other mammals are sacrificed to a total of 6,140,000 per year for the purpose of medical studies. All the animals treated in Japan, including test animals, are ...

Animal models have been commonly used for determining amino acid digestibility in humans. This allows digestibility assays to be undertaken more efficiently than those undertaken using humans directly. The laboratory rat, usually considered as a suitable animal model, has been widely used, especially as the rat is easy to raise ...

Predicting which mutations proteins tolerate while maintaining their structure and function has important applications for modeling fundamental properties of proteins and their evolution; it also drives progress in protein design. Here we develop a computational model to predict the tolerated sequence space of HIV-1 protease reachable by single mutations. We ...

Spike trains and local field potentials (LFPs) are two different manifestations of neural activity recorded simultaneously from the same electrode array and contain complementary information of stimuli or behaviors. This paper proposes a tensor product kernel based decoder, which allows modeling the sample from different sources individually and mapping them ...

The ability to accurately anticipate and suppress seizures is an important endeavor that has tremendous impact on improving the quality of lives for epileptic patients. Previous simulation studies have suggested that electrical stimulation strategy utilizing the intrinsic high complexity dynamics of the biological system may be more effective in reducing ...

Using an extensive database of in situ observations we present a model that estimates the particle backscattering coefficient as a function of the total chlorophyll concentration in the open-ocean (Case-1 waters). The parameters of the model include a constant background component and the chlorophyll-specific backscattering coefficients associated with small (<20μm) ...

This study examined the relationship between television antismoking advertisements and the proportion of smokers who call a smokers' quitline who are ready to quit or have high confidence in quitting. The primary data of interest came from completed intake interviews of smokers. Using a generalized linear model, we modeled the ...

This article presents a review of the porous physical characteristics, phenomena and simulation models so far investigated and applied in the management of biodegradable wastes (BW), summarising the main properties of porous media and the dynamics of fluids within its voids. The aim is to highlight how the description of ...

We consider analysis of clustered binary data from multiple observations for each subject in which any two observations from a subject are assumed to have a common correlation coefficient. In the weighted sign test on proportion in clustered binary data, three weighting schemes are considered: equal weights to observations, equal ...

We study a nonlinear q-voter model with stochastic driving on a complete graph. We investigate two types of stochasticity that, using the language of social sciences, can be interpreted as different kinds of nonconformity. From a social point of view, it is very important to distinguish between two types nonconformity, ...

Thioredoxin reductase 1 (TXNRD1) and thioredoxin interacting protein (TXNIP) also known as thioredoxin binding protein 2 or vitamin D3-upregulated protein 1 are key players in oxidative stress control. Thioredoxin (TRX) is one of the major components of the thiol reducing system and plays multiple roles in cellular processes. Computational analyses ...

The economical profitability of the dairy industry is based on the quality of the bulk milk collected in the farms, therefore it was based on the herd level rather than on the individual animals at real time. Udder infection and stage of lactation are directly related to the quality of ...

Models of habitat selection often assume that organisms choose habitats based on their intrinsic quality, regardless of the position of these habitats relative to low-quality habitats in the landscape. We created a habitat matrix in which high-quality (predator-free) aquatic habitat patches were positioned adjacent to (predator-associated) or isolated from (control) ...